Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   SITYG_RS02755 Genome accession   NZ_AP014880
Coordinates   534544..535257 (-) Length   237 a.a.
NCBI ID   WP_096362604.1    Uniprot ID   A0AAD1C8C4
Organism   Streptococcus intermedius strain TYG1620     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 529544..540257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS02740 (SITYG_05230) - 530066..531190 (+) 1125 WP_003073569.1 AI-2E family transporter -
  SITYG_RS02745 (SITYG_05240) - 531413..533059 (+) 1647 WP_096362603.1 phosphoenolpyruvate carboxykinase (ATP) -
  SITYG_RS02750 (SITYG_05250) - 533148..534488 (+) 1341 WP_003078229.1 hemolysin family protein -
  SITYG_RS02755 (SITYG_05260) treR 534544..535257 (-) 714 WP_096362604.1 trehalose operon repressor Regulator
  SITYG_RS02760 (SITYG_05270) treP 535436..537448 (+) 2013 WP_009568186.1 PTS system trehalose-specific EIIBC component -
  SITYG_RS02765 (SITYG_05280) treC 537616..539259 (+) 1644 WP_096362605.1 alpha,alpha-phosphotrehalase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 27681.77 Da        Isoelectric Point: 9.2624

>NTDB_id=67247 SITYG_RS02755 WP_096362604.1 534544..535257(-) (treR) [Streptococcus intermedius strain TYG1620]
MKKYEQIFKLLKQDILNETYQIDDYLPSEHELVQTYKVSRDTIRKSLDLLQKAELIQKIRGQGSKVIKQAQIDFPVSNLT
SYQELVQQHGINSKTNLIQLGKITVDKKLSNLTGFPEYRLVWRIVRQRVVDDVASVLDIDYLDKTLVPSLTREIAEQSIY
AYLEEELGLRIAYAQKEITIDPATNRDQILMDIGTDQHVVSVKSKVYLADGQQFQFTDSRHKLEKFRFIDFAKRQKR

Nucleotide


Download         Length: 714 bp        

>NTDB_id=67247 SITYG_RS02755 WP_096362604.1 534544..535257(-) (treR) [Streptococcus intermedius strain TYG1620]
ATGAAAAAATATGAACAAATTTTCAAACTCCTAAAACAGGATATTCTAAATGAAACATATCAGATCGATGATTATCTCCC
TAGTGAACACGAACTCGTACAAACTTACAAAGTCAGTCGTGACACCATTCGTAAGTCACTTGACTTACTTCAAAAAGCAG
AGCTCATCCAAAAAATAAGAGGACAAGGTTCTAAAGTCATCAAACAAGCACAGATTGATTTTCCTGTCTCCAACCTGACT
AGCTACCAAGAACTCGTGCAGCAGCATGGAATAAATTCTAAAACTAATCTCATCCAATTAGGGAAAATTACAGTTGATAA
AAAATTATCTAATCTCACTGGTTTTCCTGAATATCGTCTGGTATGGCGAATTGTCCGCCAAAGAGTAGTCGATGACGTCG
CTTCTGTTCTAGATATTGATTATCTTGATAAAACTCTTGTCCCTTCCTTAACTAGAGAAATAGCAGAACAATCGATTTAT
GCTTATTTAGAAGAAGAATTAGGACTGCGCATTGCCTATGCCCAAAAAGAAATTACGATTGATCCAGCTACAAACCGTGA
CCAAATCTTGATGGATATCGGAACTGACCAGCATGTCGTTTCTGTCAAATCCAAAGTTTACCTTGCAGATGGACAACAAT
TTCAATTTACAGATAGTCGCCATAAACTCGAAAAGTTCCGTTTTATTGACTTTGCTAAGCGACAAAAACGCTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, gntR family (GntR)

(3-66)

UTRA domain (UTRA)

(90-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

63.559

99.578

0.633

Multiple sequence alignment