Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG963_RS13440 Genome accession   NZ_CP109190
Coordinates   3018237..3019031 (+) Length   264 a.a.
NCBI ID   WP_030927140.1    Uniprot ID   A0ABV2UD45
Organism   Streptomyces sp. NBC_01707     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3013237..3024031
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG963_RS13425 (OG963_13450) - 3013373..3013909 (+) 537 WP_319327197.1 TerD family protein -
  OG963_RS13430 (OG963_13455) - 3014118..3017021 (-) 2904 WP_030927144.1 vitamin B12-dependent ribonucleotide reductase -
  OG963_RS13435 (OG963_13460) nrdR 3017182..3017694 (-) 513 WP_030927142.1 transcriptional regulator NrdR -
  OG963_RS13440 (OG963_13465) dinR/lexA 3018237..3019031 (+) 795 WP_030927140.1 transcriptional repressor LexA Regulator
  OG963_RS13445 (OG963_13470) - 3019166..3021136 (-) 1971 WP_093777315.1 ATP-dependent DNA helicase -
  OG963_RS13450 (OG963_13475) - 3021187..3023046 (-) 1860 WP_371798942.1 IucA/IucC family siderophore biosynthesis protein -
  OG963_RS13455 (OG963_13480) - 3023107..3023976 (-) 870 WP_319739476.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28665.41 Da        Isoelectric Point: 7.4241

>NTDB_id=672452 OG963_RS13440 WP_030927140.1 3018237..3019031(+) (dinR/lexA) [Streptomyces sp. NBC_01707]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=672452 OG963_RS13440 WP_030927140.1 3018237..3019031(+) (dinR/lexA) [Streptomyces sp. NBC_01707]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCAGAGCCTGCGCGCCCAGCGCGCTCGCTCCCCGGTCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAGCGACGGGGATACCCA
CCCTCGATGCGGGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCTCTGGAACG
CAAGGGCTTCCTCCGCCGCGACCCTCACCGCCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACACAGCCGA
CCGACACGACCGGCAAGCCCGCCGCTTCGTACGTACCGCTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCTGCGATCTGCGACGGCGACTGGGTCACCGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGAGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371