Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   SITYG_RS02045 Genome accession   NZ_AP014880
Coordinates   390099..390830 (+) Length   243 a.a.
NCBI ID   WP_003073841.1    Uniprot ID   -
Organism   Streptococcus intermedius strain TYG1620     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 385099..395830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SITYG_RS02010 (SITYG_03760) - 385437..386876 (+) 1440 WP_048784952.1 NCS2 family permease -
  SITYG_RS02020 (SITYG_03770) tsaE 387214..387654 (+) 441 WP_009568047.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  SITYG_RS02025 (SITYG_03780) - 387647..388168 (+) 522 WP_096362548.1 GNAT family N-acetyltransferase -
  SITYG_RS02030 (SITYG_03790) brpA 388176..389279 (+) 1104 WP_003073846.1 biofilm formation/cell division transcriptional regulator BrpA -
  SITYG_RS02035 (SITYG_03800) - 389323..389610 (-) 288 WP_096362549.1 hypothetical protein -
  SITYG_RS02040 (SITYG_03810) - 389620..390030 (-) 411 WP_096362550.1 HIT family protein -
  SITYG_RS02045 (SITYG_03820) pptA 390099..390830 (+) 732 WP_003073841.1 ABC transporter ATP-binding protein Regulator
  SITYG_RS02050 (SITYG_03830) - 390827..391873 (+) 1047 WP_003073839.1 ABC transporter permease -
  SITYG_RS02055 (SITYG_03840) ccrZ 391924..392721 (+) 798 WP_003073837.1 cell cycle regulator CcrZ -
  SITYG_RS02060 (SITYG_03850) trmB 392718..393353 (+) 636 WP_003078354.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  SITYG_RS02065 (SITYG_03860) - 393760..394452 (+) 693 WP_096362551.1 VIT family protein -
  SITYG_RS02070 (SITYG_03870) rimP 394664..395152 (+) 489 WP_006269953.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27036.50 Da        Isoelectric Point: 4.5977

>NTDB_id=67238 SITYG_RS02045 WP_003073841.1 390099..390830(+) (pptA) [Streptococcus intermedius strain TYG1620]
MLEIKGLTGGYINIPVLKDISFTVENGELVGLIGLNGAGKSTTINEIIGLLTPYKGEILIDGAKLQDNPMGYRKKIGFIP
ETPSLYEELTLREHIETVAMAYDVDQEVAFARVEQLLTKFRLKEKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPF
LGLDPVAIADLIELLKDEKTKGKSILMSTHVLDSAERMCDSFVILHKGEIRAKGNLSELQSEFSMPEASLNEIYLALTEE
ASL

Nucleotide


Download         Length: 732 bp        

>NTDB_id=67238 SITYG_RS02045 WP_003073841.1 390099..390830(+) (pptA) [Streptococcus intermedius strain TYG1620]
ATGTTAGAAATAAAAGGGCTTACAGGCGGATATATAAATATCCCTGTTTTAAAAGATATCAGTTTCACGGTAGAAAATGG
TGAGCTGGTGGGCTTAATTGGCTTGAATGGTGCTGGAAAGTCTACAACAATCAATGAAATTATTGGACTTTTAACTCCTT
ATAAAGGGGAAATTTTAATTGACGGCGCTAAACTGCAAGATAATCCCATGGGTTATCGTAAGAAAATTGGATTTATTCCA
GAGACCCCTAGTTTATATGAGGAATTGACTTTAAGAGAGCACATTGAAACAGTTGCTATGGCTTATGATGTCGATCAAGA
GGTAGCTTTTGCGCGCGTGGAACAATTATTGACCAAGTTTCGCTTGAAAGAAAAATTGGATTGGTTCCCCGTTCACTTTT
CAAAGGGAATGAAGCAAAAAGTCATGATTATTTGCGCCTTTGTAGTTGATCCGAGTCTCTTTATCGTGGATGAGCCATTT
TTGGGACTCGATCCAGTAGCGATTGCTGATTTGATAGAGCTTTTGAAAGATGAAAAGACGAAAGGCAAGTCTATCCTGAT
GAGTACGCATGTGTTGGACTCAGCAGAAAGAATGTGTGATTCATTCGTGATTTTGCACAAGGGGGAAATCCGAGCGAAAG
GTAACTTATCAGAGTTGCAATCAGAATTTTCTATGCCAGAAGCTAGCCTGAATGAGATCTATTTGGCATTGACAGAAGAG
GCAAGTCTATGA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

71.13

98.354

0.7
  pptA Streptococcus salivarius strain HSISS4

70.711

98.354

0.695

Multiple sequence alignment