Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OIE83_RS11930 Genome accession   NZ_CP109188
Coordinates   2688740..2689717 (-) Length   325 a.a.
NCBI ID   WP_147983762.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01708     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2683740..2694717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS11910 (OIE83_11905) - 2683777..2683971 (-) 195 WP_014154257.1 hypothetical protein -
  OIE83_RS11915 (OIE83_11910) - 2684138..2686264 (+) 2127 WP_329210032.1 alpha/beta fold hydrolase -
  OIE83_RS11920 (OIE83_11915) - 2686274..2687395 (-) 1122 WP_329210033.1 hypothetical protein -
  OIE83_RS11925 (OIE83_11920) - 2687599..2688750 (-) 1152 WP_319224615.1 dipeptide ABC transporter ATP-binding protein -
  OIE83_RS11930 (OIE83_11925) amiE 2688740..2689717 (-) 978 WP_147983762.1 ABC transporter ATP-binding protein Regulator
  OIE83_RS11935 (OIE83_11930) - 2689731..2690723 (-) 993 WP_124274532.1 ABC transporter permease -
  OIE83_RS11940 (OIE83_11935) - 2690716..2691639 (-) 924 WP_124274531.1 ABC transporter permease -
  OIE83_RS11945 (OIE83_11940) - 2691729..2693357 (-) 1629 WP_329210036.1 ABC transporter substrate-binding protein -
  OIE83_RS11950 (OIE83_11945) - 2693523..2694665 (-) 1143 WP_329207044.1 dipeptide ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35794.59 Da        Isoelectric Point: 6.8270

>NTDB_id=672379 OIE83_RS11930 WP_147983762.1 2688740..2689717(-) (amiE) [Streptomyces sp. NBC_01708]
MLLEVRDLHVEFHTRDGVAKAVNGVNYSVSEGETLAVLGESGSGKSVTAQAIMGILDMPPGRISGGEILFKDRDLLKLKN
EERRRIRGQEMAMIFQDALSSLNPVLSVGAQLGEMFVVHRGMSRGDAKAKAIELMDRVRIPAARQRVGDFPHQFSGGMRQ
RIMIAMALALEPDLIIADEPTTALDVTVQAQVMDLLAELQRELNMGLILITHDLGVVADVADKIAVMYAGRIVETSPVHP
IYQAPAHPYTKGLLRSIPRLDQKGQELYAIKGLPPNLLHIPPGCAFHPRCPMAQAVCRTDVPPLYTVDEERRSACHFWKE
TLDAR

Nucleotide


Download         Length: 978 bp        

>NTDB_id=672379 OIE83_RS11930 WP_147983762.1 2688740..2689717(-) (amiE) [Streptomyces sp. NBC_01708]
ATGTTGCTCGAAGTGCGCGATCTGCACGTGGAGTTCCACACCCGGGACGGAGTGGCCAAGGCCGTCAACGGGGTCAACTA
CTCGGTGTCCGAGGGGGAGACCCTCGCCGTGCTCGGCGAGTCCGGCTCGGGCAAGTCCGTCACCGCCCAGGCGATCATGG
GCATCCTCGACATGCCGCCCGGGCGGATCAGCGGGGGCGAGATCCTCTTCAAGGACCGCGACCTGCTGAAGCTCAAGAAC
GAGGAGCGCCGGCGGATCCGCGGCCAGGAGATGGCCATGATCTTCCAGGACGCGCTGTCCTCGCTGAACCCCGTCCTCAG
CGTGGGCGCGCAGCTCGGCGAGATGTTCGTCGTGCACCGGGGGATGTCACGGGGCGACGCCAAGGCCAAGGCGATCGAAC
TGATGGACCGGGTGCGCATCCCGGCGGCCCGGCAACGGGTGGGCGACTTCCCCCACCAGTTCTCCGGCGGTATGCGCCAG
CGCATCATGATCGCGATGGCGCTGGCCCTGGAGCCCGACCTGATCATCGCCGACGAACCGACGACCGCCCTCGACGTGAC
CGTCCAGGCCCAGGTGATGGACCTGCTCGCCGAGCTCCAGCGCGAGCTCAACATGGGCCTGATCCTGATCACGCACGACC
TCGGCGTGGTCGCCGACGTCGCCGACAAGATCGCCGTGATGTACGCGGGCCGGATCGTCGAGACCTCACCCGTCCACCCG
ATCTACCAGGCGCCCGCCCACCCGTACACCAAGGGCCTGCTGAGGTCGATCCCGCGCCTGGACCAGAAGGGCCAGGAGCT
CTACGCGATCAAGGGCCTGCCGCCCAACCTGCTGCACATCCCGCCCGGCTGCGCCTTCCACCCGCGCTGCCCCATGGCCC
AGGCCGTGTGCCGTACGGACGTGCCCCCGCTCTACACCGTGGACGAGGAACGCCGGAGCGCCTGCCACTTCTGGAAGGAG
ACGCTCGATGCACGCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(23-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

47.368

99.385

0.471
  amiE Streptococcus thermophilus LMG 18311

47.419

95.385

0.452
  amiE Streptococcus thermophilus LMD-9

47.419

95.385

0.452
  oppD Streptococcus mutans UA159

46.178

96.615

0.446