Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE83_RS08595 Genome accession   NZ_CP109188
Coordinates   1942117..1942914 (+) Length   265 a.a.
NCBI ID   WP_099176479.1    Uniprot ID   A0ABU8A8Z0
Organism   Streptomyces sp. NBC_01708     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1937117..1947914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE83_RS08580 (OIE83_08580) - 1937249..1937779 (+) 531 WP_147984059.1 TerD family protein -
  OIE83_RS08585 (OIE83_08585) - 1937989..1940898 (-) 2910 WP_329044397.1 vitamin B12-dependent ribonucleotide reductase -
  OIE83_RS08590 (OIE83_08590) nrdR 1941055..1941570 (-) 516 WP_124275039.1 transcriptional regulator NrdR -
  OIE83_RS08595 (OIE83_08595) dinR/lexA 1942117..1942914 (+) 798 WP_099176479.1 transcriptional repressor LexA Regulator
  OIE83_RS08600 (OIE83_08600) - 1943051..1945018 (-) 1968 WP_124275038.1 ATP-dependent DNA helicase -
  OIE83_RS08605 (OIE83_08605) - 1945069..1946919 (-) 1851 WP_124275037.1 IucA/IucC family siderophore biosynthesis protein -
  OIE83_RS08610 (OIE83_08610) - 1946980..1947699 (-) 720 WP_329209794.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28749.55 Da        Isoelectric Point: 7.0792

>NTDB_id=672363 OIE83_RS08595 WP_099176479.1 1942117..1942914(+) (dinR/lexA) [Streptomyces sp. NBC_01708]
MTTTADSATITAQDHRSQSRLEPVHAMNDSVMNAEGPEPARAARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=672363 OIE83_RS08595 WP_099176479.1 1942117..1942914(+) (dinR/lexA) [Streptomyces sp. NBC_01708]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACTCAGTCATGAACGCGGAGGGGCCCGAGCCCGCACGGGCCGCGCGCTCCTTGCCCGGACGACCTCCCGGAATCC
GGGCCGACAGCTCCGGGCTCACGGACAGGCAGCGGCGCGTGATCGAGGTGATCCGGGATTCCGTGCAGCGCCGGGGATAT
CCGCCGTCGATGCGCGAGATCGGTCAGGCGGTGGGACTCTCCAGCACCTCGTCCGTCGCCCATCAGCTGATGGCTCTGGA
GCGCAAGGGCTTCCTGCGCCGCGACCCGCACCGGCCGCGCGCCTACGAGGTCCGGGGCTCGGACCAGCCCAGCACGCAGC
CGACGGACACCACCGGGAAGCCCGCCGCGTCGTACGTGCCGCTGGTCGGCCGGATCGCGGCCGGTGGCCCGATCCTCGCC
GAGGAGTCCGTCGAGGACGTCTTCCCGCTCCCCCGCCAGCTCGTCGGTGACGGCGAGCTCTTCGTGCTGAAGGTCGTCGG
TGACTCGATGATCGAGGCGGCGATCATGGACGGGGACTGGGTGACGGTCAGGCGCCAGCCGGTCGCGGAGAACGGCGACA
TCGTGGCGGCCATGCTGGACGGCGAGGCGACGGTCAAGCGGTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACTCCGCCTACCAGCCGATTCCCGGTGACGAGGCGACGATCCTGGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37