Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   H7R25_RS22860 Genome accession   NZ_AP022261
Coordinates   4813098..4814090 (+) Length   330 a.a.
NCBI ID   WP_000224470.1    Uniprot ID   P0ACQ1
Organism   Escherichia coli strain WP8-S18-ESBL-07     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4808098..4819090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7R25_RS22835 (WP8S18E07_44420) rbsD 4808222..4808641 (+) 420 WP_000715936.1 D-ribose pyranase -
  H7R25_RS22840 (WP8S18E07_44430) rbsA 4808649..4810154 (+) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  H7R25_RS22845 (WP8S18E07_44440) rbsC 4810159..4811124 (+) 966 WP_000211858.1 ribose ABC transporter permease -
  H7R25_RS22850 (WP8S18E07_44450) rbsB 4811149..4812039 (+) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  H7R25_RS22855 (WP8S18E07_44460) rbsK 4812165..4813094 (+) 930 WP_001309865.1 ribokinase -
  H7R25_RS22860 (WP8S18E07_44470) cytR 4813098..4814090 (+) 993 WP_000224470.1 ribose operon transcriptional repressor RbsR Regulator
  H7R25_RS22865 (WP8S18E07_44480) mdtD 4814056..4815483 (-) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  H7R25_RS22870 (WP8S18E07_44490) yieP 4815506..4816198 (-) 693 WP_001131178.1 FadR/GntR family transcriptional regulator -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36611.90 Da        Isoelectric Point: 5.2141

>NTDB_id=67229 H7R25_RS22860 WP_000224470.1 4813098..4814090(+) (cytR) [Escherichia coli strain WP8-S18-ESBL-07]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=67229 H7R25_RS22860 WP_000224470.1 4813098..4814090(+) (cytR) [Escherichia coli strain WP8-S18-ESBL-07]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCTGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTTGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCACCGTTCGATGGCGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGTTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGTGTTTACCAGGCGCTGTATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCGAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAACCCAGCCAACTCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0ACQ1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment