Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE77_RS13930 Genome accession   NZ_CP109182
Coordinates   3327636..3328412 (+) Length   258 a.a.
NCBI ID   WP_054229877.1    Uniprot ID   A0A250VHF9
Organism   Streptomyces sp. NBC_01715     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3322636..3333412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE77_RS13915 (OIE77_13915) - 3322788..3323321 (+) 534 WP_148010838.1 TerD family protein -
  OIE77_RS13920 (OIE77_13920) - 3323457..3326366 (-) 2910 WP_148010837.1 vitamin B12-dependent ribonucleotide reductase -
  OIE77_RS13925 (OIE77_13925) nrdR 3326516..3327094 (-) 579 WP_148010836.1 transcriptional regulator NrdR -
  OIE77_RS13930 (OIE77_13930) dinR/lexA 3327636..3328412 (+) 777 WP_054229877.1 transcriptional repressor LexA Regulator
  OIE77_RS13935 (OIE77_13935) - 3328992..3331004 (-) 2013 WP_148010835.1 ATP-dependent DNA helicase -
  OIE77_RS13940 (OIE77_13940) - 3331117..3333114 (-) 1998 WP_329320853.1 IucA/IucC family siderophore biosynthesis protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27935.63 Da        Isoelectric Point: 7.4755

>NTDB_id=672282 OIE77_RS13930 WP_054229877.1 3327636..3328412(+) (dinR/lexA) [Streptomyces sp. NBC_01715]
MTTTADSATITAQDRSQGRLEPVHAMNEATNHEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=672282 OIE77_RS13930 WP_054229877.1 3327636..3328412(+) (dinR/lexA) [Streptomyces sp. NBC_01715]
GTGACCACCACCGCAGACAGCGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAACCATGAGGGGCCCAAGCGCTCCCTGCCGGGCCGACCTCCAGGCATCCGCGCGGACAGCTCGGGACTCA
CCGACAGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAACGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCGGTAGGCCTCTCCAGCACCTCGTCGGTCGCCCACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCGTACGAGGTCAGGGGCTCCGACCAGTCCTCGGCCCAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTGCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCCGTGGAGGACGTC
TTCCCGCTCCCCCGGCAGCTGGTGGGTGACGGTGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGTGACGGGGACTGGGTGACGGTCCGCCGCCAGCCCGTCGCGGAGAACGGCGACATCGTCGCCGCGATGCTGGACG
GCGAGGCGACCGTGAAGCGGTTCAAGCGCGAGGACGGCCATGTCTGGCTGCTCCCGCACAACGCGGCCTACCAGCCGATC
CCCGGTGACGAGGCGACCATCCTGGGCAAGGTGGTGGCCGTACTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A250VHF9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372