Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OIE74_RS37745 Genome accession   NZ_CP109181
Coordinates   8493866..8494867 (-) Length   333 a.a.
NCBI ID   WP_329392579.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01716     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8488866..8499867
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE74_RS37735 (OIE74_37760) - 8489310..8491646 (-) 2337 WP_329392007.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OIE74_RS37740 (OIE74_37765) - 8491769..8493718 (-) 1950 WP_329392009.1 cellulase family glycosylhydrolase -
  OIE74_RS37745 (OIE74_37770) cytR 8493866..8494867 (-) 1002 WP_329392579.1 LacI family DNA-binding transcriptional regulator Regulator
  OIE74_RS37750 (OIE74_37775) - 8494963..8495790 (-) 828 WP_329392010.1 carbohydrate ABC transporter permease -
  OIE74_RS37755 (OIE74_37780) - 8495804..8496745 (-) 942 WP_329392012.1 sugar ABC transporter permease -
  OIE74_RS37760 (OIE74_37785) - 8496778..8498070 (-) 1293 WP_329392014.1 ABC transporter substrate-binding protein -
  OIE74_RS37765 (OIE74_37790) - 8498446..8498730 (-) 285 WP_329392016.1 hypothetical protein -
  OIE74_RS37770 (OIE74_37795) - 8498967..8499239 (+) 273 WP_329392018.1 DUF1876 domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34702.60 Da        Isoelectric Point: 6.8406

>NTDB_id=672261 OIE74_RS37745 WP_329392579.1 8493866..8494867(-) (cytR) [Streptomyces sp. NBC_01716]
MAAAAGVSTAAVSQAVNGTGRISDATRRRVLDAAAELGWSPSASASALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMAQESALYERLAAEGRIDGAVLTDARADDPRPRLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
DAGVREAVAHLLELGHRRLAYIAGPADLVHTGLRRAAFEDALAGAGLRPAAVRHTDFTERAAVAVTEELLALPDRPTALV
FSNDSMAVCGIGTAQRGGLRVPADVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGEDVPPPVLDGRPCL
VVRESTGPVPSAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=672261 OIE74_RS37745 WP_329392579.1 8493866..8494867(-) (cytR) [Streptomyces sp. NBC_01716]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCCGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGATGCCACCCG
CCGCCGGGTCCTGGACGCGGCCGCCGAACTGGGCTGGTCGCCGAGCGCGTCGGCGTCGGCCCTGCGCCGTGCGCGCACCC
GTACGATCGCGCTCGTCGTGCGGCGGCCCACCGATGTCCTGGGCGCGGACCCGCACTTCAGTGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCCCCCCGGGGCTACGGTCTGCTCCTCCATCTGGTCGCCGACATGGCCCAGGAGAGCGCGCTGTACGA
ACGGCTGGCCGCGGAAGGCCGGATCGACGGCGCGGTCCTGACCGACGCGCGGGCGGACGACCCCCGCCCACGGCTGCTGC
GCGACCTCGGGCTGCCCGCCGTACTGCTGGGCGCGCCTGACCCGGCCTCGCCCGTGCCCGGCGTCGGCCTCGGGCAGCAG
GACGCCGGTGTCCGTGAGGCCGTCGCGCACCTGCTGGAGCTCGGCCACCGGCGCCTCGCGTACATCGCGGGCCCGGCCGA
TCTGGTGCACACCGGTCTGCGCCGGGCCGCGTTCGAGGACGCCCTCGCCGGGGCGGGGCTGCGGCCCGCCGCCGTCCGGC
ACACCGATTTCACCGAGCGGGCGGCCGTCGCGGTCACCGAGGAACTGCTCGCCCTGCCCGACCGGCCGACCGCGCTGGTC
TTCTCCAACGACTCCATGGCCGTCTGCGGTATCGGTACGGCCCAGCGCGGCGGGCTGCGGGTGCCCGCGGACGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGTTGGCTGCATCCCCGGCTCACCACCGTGGACCAGCAGGTGCAGCGGGTCG
GTGCGGCCGCCGCCCGCACGCTGCTCGTCCGGTGCGGCGAGGACGTACCCCCGCCGGTCCTCGACGGACGCCCGTGCCTG
GTCGTACGGGAGTCCACCGGCCCCGTACCGTCCGCGCCCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.693

100

0.363