Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OHB49_RS12770 Genome accession   NZ_CP109178
Coordinates   2816995..2817789 (+) Length   264 a.a.
NCBI ID   WP_030974105.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01717     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2811995..2822789
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHB49_RS12755 (OHB49_12780) - 2812134..2812670 (+) 537 WP_329160335.1 TerD family protein -
  OHB49_RS12760 (OHB49_12785) - 2812877..2815780 (-) 2904 WP_329160338.1 vitamin B12-dependent ribonucleotide reductase -
  OHB49_RS12765 (OHB49_12790) nrdR 2815941..2816453 (-) 513 WP_030974103.1 transcriptional regulator NrdR -
  OHB49_RS12770 (OHB49_12795) dinR/lexA 2816995..2817789 (+) 795 WP_030974105.1 transcriptional repressor LexA Regulator
  OHB49_RS12775 (OHB49_12800) - 2817926..2819896 (-) 1971 WP_030974107.1 ATP-dependent DNA helicase -
  OHB49_RS12780 (OHB49_12805) - 2819947..2821806 (-) 1860 WP_329160341.1 IucA/IucC family siderophore biosynthesis protein -
  OHB49_RS12785 (OHB49_12810) - 2821867..2822748 (-) 882 WP_329160343.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28651.39 Da        Isoelectric Point: 7.4241

>NTDB_id=672117 OHB49_RS12770 WP_030974105.1 2816995..2817789(+) (dinR/lexA) [Streptomyces sp. NBC_01717]
MTTTADSATITAQDRSQSRLEPVHAMNDSVRNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTSGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=672117 OHB49_RS12770 WP_030974105.1 2816995..2817789(+) (dinR/lexA) [Streptomyces sp. NBC_01717]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
TGACTCAGTCAGGAACACGGAGGGGCCTGAGCCGGCGCGCCCAGCGCGCTCGCTCCCCGGCCGACCTCCAGGAATCCGAG
CGGACAGCTCGGGGCTCACGGACCGGCAGCGGCGAGTGATCGAGGTCATCCGCGACTCGGTGCAACGCCGGGGGTACCCA
CCCTCGATGCGAGAGATCGGCCAGGCGGTGGGGCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCTCTGGAGCG
CAAGGGCTTCCTCCGCCGCGACCCTCACCGTCCCCGGGCGTACGAGGTCCGCGGTTCGGACCAGCCCAGCACGCAGCCGA
CCGACACGAGCGGCAAGCCCGCCGCATCGTACGTACCACTGGTCGGCCGGATCGCAGCCGGCGGACCGATCCTCGCCGAG
GAATCGGTCGAGGACGTCTTTCCGCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTCCTGAAGGTCGTCGGTGA
CTCGATGATCGAGGCGGCGATCTGCGACGGCGACTGGGTCACGGTGCGCCGTCAGCCCGTCGCGGAGAACGGCGACATCG
TGGCCGCCATGCTGGACGGCGAGGCGACGGTCAAGCGCTTCAAGCGGGAGGACGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCGGTGTTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371