Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   MUA45_RS00185 Genome accession   NZ_CP094765
Coordinates   40000..41628 (-) Length   542 a.a.
NCBI ID   WP_252559361.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6215     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 35000..46628
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA45_RS00145 (MUA45_00145) - 35745..35921 (-) 177 WP_252559339.1 hypothetical protein -
  MUA45_RS00150 (MUA45_00150) - 35927..36229 (-) 303 WP_252559341.1 hypothetical protein -
  MUA45_RS00155 (MUA45_00155) - 36248..36715 (-) 468 WP_252559343.1 hypothetical protein -
  MUA45_RS00160 (MUA45_00160) - 36722..37615 (-) 894 WP_252559344.1 helix-turn-helix transcriptional regulator -
  MUA45_RS00165 (MUA45_00165) - 37785..38231 (-) 447 WP_252559346.1 RadC family protein -
  MUA45_RS00170 (MUA45_00170) - 38259..38765 (-) 507 WP_252559348.1 DUF1643 domain-containing protein -
  MUA45_RS00175 (MUA45_00175) - 38781..39092 (-) 312 WP_252559354.1 DUF960 family protein -
  MUA45_RS00180 (MUA45_00180) - 39188..39526 (-) 339 WP_252559359.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA45_RS00185 (MUA45_00185) ccrB 40000..41628 (-) 1629 WP_252559361.1 cassette chromosome recombinase CcrB Machinery gene
  MUA45_RS00190 (MUA45_00190) ccrA 41650..42999 (-) 1350 WP_250396288.1 cassette chromosome recombinase CcrA Machinery gene
  MUA45_RS00195 (MUA45_00195) cch1 43178..44962 (-) 1785 WP_252559364.1 cassette chromosome replicative helicase -
  MUA45_RS00200 (MUA45_00200) ssb 44962..45255 (-) 294 WP_107638748.1 cassette chromosome ssDNA-binding protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62537.39 Da        Isoelectric Point: 9.5492

>NTDB_id=672104 MUA45_RS00185 WP_252559361.1 40000..41628(-) (ccrB) [Staphylococcus aureus strain IVB6215]
MQQLKQKRVGIYVRVSTEIQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPELQRMLHDANEGLIDCVM
VYKTNRLARNTSDLLKIVEDLHRQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKMANALNHKGYVTKKGNPFSTSAIAYILTNPFYIGKIQFAK
YKDWNEKRRKGLNDNPIIADGKHSPIISQELWDKVHSRMKQVSQKPQVHGKGTNLLTGIIHCPQCGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRANVIEKYVMDQILEIVKSDKVINKVLERVNQENKVDIGALNHDIDYKQQQFD
EIQAKLNNLVKTIEDNPDLTSVLKETIHQYETQLNDITNQMNQLKQQQNQEKPSYDTKQIALLLQRIFQNIESMDKSHLK
ALYLTVIDRIDIRKDGNHKKQFFVTLKLNNEIIKQLFNNNSLDEVLLSTSSLFLPQTLFLQI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=672104 MUA45_RS00185 WP_252559361.1 40000..41628(-) (ccrB) [Staphylococcus aureus strain IVB6215]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTTCGTGTATCAACGGAAATCCAAAGTGCTGAAGGTTATAGTAT
CGACGGACAAATCAATCAAATCAAAGAATATTGTAACTTTCATCATTTCGAGGTCAAAGATATATACGCCGATCGTGGTA
TATCAGGAAAGTCTATGAACCGTCCTGAACTTCAACGTATGTTACATGATGCAAATGAAGGTCTCATCGATTGTGTCATG
GTATATAAAACAAATCGACTCGCACGTAATACATCAGACTTACTCAAAATTGTTGAAGACCTTCATCGTCAAAATGTCGA
ATTCTTCAGCTTATCTGAACGTATGGAAGTCAATACTTCTTCTGGTAAACTCATGTTACAAATACTTGCGAGCTTCTCAG
AATTCGAACGTAATAACATTGTCGAGAATGTATTCATGGGCCAAACTAGACGTGCACAAGAAGGCTACTATCAAGGGAAT
TTGCCGCTGGGCTATGACAAAATACCGGATAGCAAGCATGAACTCATGATAAATCAACATGAAGCTAATATCGTCAAATA
TATATTTGAGTCATATGCTAAAGGTCATGGTTATCGAAAAATGGCTAACGCACTTAATCATAAAGGTTATGTAACAAAGA
AAGGTAATCCATTTAGTACATCAGCTATAGCTTATATCCTTACCAACCCCTTCTACATCGGTAAAATTCAATTTGCGAAG
TATAAAGACTGGAATGAGAAACGACGTAAAGGTCTTAATGACAATCCTATAATAGCTGACGGGAAGCATTCACCTATCAT
TAGTCAAGAACTATGGGATAAAGTACATTCACGTATGAAGCAAGTTAGTCAAAAACCCCAAGTTCATGGAAAAGGAACCA
ACCTATTAACAGGTATTATTCACTGCCCACAATGCGGCGCACCTATGGCGGCAAGTAATACCACTAATACACTCAAAGAT
GGAACTAAGAAACGTATTCGCTATTATTCTTGTAGTAACTTCCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGCGT
TAGAGCTAATGTTATCGAAAAGTATGTTATGGATCAAATACTTGAAATAGTCAAAAGTGATAAAGTCATTAATAAAGTCT
TAGAACGTGTCAATCAAGAGAATAAAGTCGATATTGGTGCATTGAACCATGATATTGATTATAAGCAACAACAATTTGAT
GAAATACAAGCTAAATTAAATAATTTGGTTAAAACTATTGAAGATAATCCAGACTTAACGTCCGTACTCAAAGAAACCAT
ACACCAATATGAAACGCAACTCAATGATATCACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAACCAT
CTTATGATACGAAACAAATCGCTCTCCTATTACAACGAATATTTCAAAACATAGAATCCATGGATAAATCACATCTTAAA
GCATTATACCTTACGGTCATTGATCGTATCGATATTCGTAAAGATGGGAATCATAAAAAGCAATTCTTTGTCACACTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATAACTCGCTCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACGCTCTTTCTTCAAATCTAA

Domains

Predicted by InterproScan.

Ogr/Delta-like zinc finger (Ogr_Delta)

(301-356)

Resolvase, N terminal domain (Resolvase)

(11-156)

Recombinase (Recombinase)

(180-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

86.162

100

0.862