Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG957_RS27650 Genome accession   NZ_CP109174
Coordinates   6213369..6215102 (-) Length   577 a.a.
NCBI ID   WP_371796269.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01718     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6208369..6220102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS27640 (OG957_27650) rpoS 6210363..6211427 (+) 1065 WP_371797325.1 RNA polymerase sigma factor Regulator
  OG957_RS27645 (OG957_27655) rcrQ 6211444..6213369 (-) 1926 WP_371796268.1 ABC transporter ATP-binding protein Regulator
  OG957_RS27650 (OG957_27660) rcrP 6213369..6215102 (-) 1734 WP_371796269.1 ABC transporter ATP-binding protein Regulator
  OG957_RS27655 (OG957_27665) - 6215273..6216718 (-) 1446 WP_371796270.1 FGGY family carbohydrate kinase -
  OG957_RS27660 (OG957_27670) - 6216779..6217084 (-) 306 WP_327129047.1 YtxH domain-containing protein -
  OG957_RS27680 (OG957_27690) - 6218457..6218657 (+) 201 WP_037822815.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62843.92 Da        Isoelectric Point: 5.7577

>NTDB_id=672078 OG957_RS27650 WP_371796269.1 6213369..6215102(-) (rcrP) [Streptomyces sp. NBC_01718]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILQYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLALMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPSLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWRALEVAQAKEFVEKLEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=672078 OG957_RS27650 WP_371796269.1 6213369..6215102(-) (rcrP) [Streptomyces sp. NBC_01718]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGCAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCTGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGCGTTCAGTCCTTCTCGGCACGTGAGGTCGG
GCGCTTCGGAGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGTATCATCATGGCGCTCGGCCAGGATGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGATTCCGCGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTATGCGCAGAGCGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAGCTGCGCGCTCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTGCCGCGGCTGTTCGACGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGTCGCTGCTGGCGAGGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCGCGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGAAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACGAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAACGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCCGAGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.102

100

0.411