Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   OG957_RS06330 Genome accession   NZ_CP109174
Coordinates   1393704..1396127 (+) Length   807 a.a.
NCBI ID   WP_371794713.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01718     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1388704..1401127
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS06305 (OG957_06330) - 1389383..1390231 (-) 849 WP_327127991.1 lysophospholipid acyltransferase family protein -
  OG957_RS06310 (OG957_06335) - 1390228..1391115 (-) 888 WP_327127990.1 GNAT family N-acyltransferase -
  OG957_RS06315 (OG957_06340) - 1391310..1392566 (-) 1257 WP_371794712.1 extracellular solute-binding protein -
  OG957_RS06320 (OG957_06345) - 1392769..1392984 (+) 216 WP_327127988.1 dodecin -
  OG957_RS06325 (OG957_06350) - 1393045..1393533 (-) 489 WP_327127987.1 hypothetical protein -
  OG957_RS06330 (OG957_06355) uvrA 1393704..1396127 (+) 2424 WP_371794713.1 ABC transporter Machinery gene
  OG957_RS06335 (OG957_06360) - 1396245..1396991 (-) 747 WP_030933948.1 succinate dehydrogenase/fumarate reductase iron-sulfur subunit -
  OG957_RS06340 (OG957_06365) - 1396988..1398937 (-) 1950 WP_327127985.1 fumarate reductase/succinate dehydrogenase flavoprotein subunit -
  OG957_RS06345 (OG957_06370) - 1398939..1399646 (-) 708 WP_327127984.1 succinate dehydrogenase -
  OG957_RS06350 (OG957_06375) - 1399742..1400632 (+) 891 WP_327127983.1 LysR substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 807 a.a.        Molecular weight: 86080.64 Da        Isoelectric Point: 6.6494

>NTDB_id=672023 OG957_RS06330 WP_371794713.1 1393704..1396127(+) (uvrA) [Streptomyces sp. NBC_01718]
MPTPHDRYVRVRGAREHNLQDVQVDIPRDTLTVFTGVSGSGKSSLAFGTIYAEAQRRYFESVAPYARRLIHQVGAPEVGE
ITGLPPAVSLEQRRSAPGARSSVGTVTTLSNSLRMLFSRAGEYPAGAERLDSDAFSPNTAAGACPECHGLGLIHRTTEEL
LVPDPSLSIRDGAIAAWPGAWQGKNLRDVLDTLGYDIGRPWRELDANDREWILFTDEQPVVTVHPVRDAGRIQRPYQGTY
MSARRYVMHTFADTKSRTLRAKAERFLTGVPCPVCGGTRLRPEAMAVTFAGRTIAELAALPLADLAEVLSAAGGDDTARV
LTADLLARIETVTELGLGYLGLDRTAPTLSSGELQRLRLATQLRSGLFGVVYVLDEPSAGLHPADTESLLAVLGRLKEAG
NSVFVVEHQMDVVRRADWLVDVGPLAGEHGGRVLHSGPPAGLADVLESATRRFLFDTGPVPVREPRTPSGWLRLIGVDRH
NVRGVDAAFPLGVFTAVTGVSGSGKSTLVGQVLAGALADRQASTTADLPAERPVPGCASALGLEAVDRLVQVDQRPIGRT
PRSNLATYTGLFDVVRKLFTATDMARERGYRAGRFSFNVAGGRCETCQGEGFVSVELLFLPSTYAPCPDCHGARYNPQTL
EVTLRGLNIAQVLDLTVASAAGFFAGTPAAERSLRTLIDVGLGYLRLGQPATELSGGEAQRIKLATELQRTRRGHTLYLL
DEPTTGLHPADVEVLMRQLHGLVDGGSTVVVVEHDMAVVAAADWVIDLGPGGGDRGGRIVATGPPTDVAGAADSRTAPYL
SAALRPG

Nucleotide


Download         Length: 2424 bp        

>NTDB_id=672023 OG957_RS06330 WP_371794713.1 1393704..1396127(+) (uvrA) [Streptomyces sp. NBC_01718]
ATGCCCACCCCCCACGATCGGTACGTTCGGGTGCGCGGCGCCCGTGAGCACAATCTGCAGGACGTCCAGGTCGACATCCC
GCGCGACACCCTCACCGTCTTCACGGGCGTCTCCGGCTCAGGCAAGTCCTCGCTCGCCTTCGGGACGATCTACGCCGAGG
CTCAGCGCCGCTATTTCGAGTCCGTCGCCCCGTACGCCCGCCGGCTGATCCACCAGGTCGGCGCGCCCGAGGTCGGCGAG
ATCACGGGGCTGCCGCCCGCGGTCTCCCTGGAGCAGCGCCGGTCCGCGCCCGGCGCGCGGTCCTCCGTCGGCACGGTCAC
CACGCTGTCCAACTCGCTGCGGATGCTGTTCTCGCGTGCCGGGGAGTACCCTGCCGGCGCCGAGCGGCTGGACTCCGACG
CGTTCTCGCCGAACACCGCCGCCGGGGCCTGCCCCGAGTGTCACGGGCTGGGCCTGATCCACCGCACCACGGAGGAGCTG
CTCGTCCCCGACCCGTCGCTGTCGATCCGCGACGGTGCGATCGCGGCCTGGCCGGGCGCCTGGCAGGGCAAGAACCTGCG
CGATGTGCTGGACACGCTGGGGTACGACATCGGCCGGCCGTGGCGCGAGCTGGACGCGAACGACCGGGAATGGATCCTCT
TCACCGACGAGCAACCGGTGGTGACGGTCCATCCGGTACGTGACGCGGGCCGGATCCAGCGCCCCTACCAGGGCACGTAC
ATGAGTGCGCGGCGCTATGTGATGCACACCTTCGCCGACACCAAGAGCCGCACCCTGCGGGCCAAGGCCGAGCGCTTCCT
GACCGGTGTCCCCTGCCCGGTCTGCGGCGGCACCCGGCTGCGCCCGGAGGCGATGGCCGTCACCTTTGCGGGCCGTACGA
TCGCCGAGCTGGCCGCACTTCCCCTCGCGGATCTCGCCGAGGTGCTGTCGGCCGCGGGCGGCGACGACACCGCGCGGGTG
CTGACGGCGGATCTGCTGGCCCGGATCGAGACGGTGACCGAGCTCGGTCTCGGCTATCTCGGCCTCGACCGTACGGCTCC
CACGCTGTCCTCCGGTGAGCTGCAGCGACTGCGCCTCGCCACCCAGCTGCGGTCGGGACTGTTCGGGGTCGTCTATGTGC
TGGACGAGCCGTCGGCCGGTCTGCACCCGGCGGACACCGAGTCGCTGCTCGCGGTCCTCGGGCGGCTGAAGGAGGCCGGG
AACTCGGTCTTCGTCGTGGAGCACCAGATGGATGTGGTGCGGCGGGCGGACTGGCTGGTCGATGTGGGGCCACTGGCAGG
CGAACACGGGGGCAGGGTGCTGCACAGCGGGCCCCCGGCCGGGCTCGCCGACGTACTGGAGTCGGCGACGCGACGGTTCC
TCTTCGACACGGGGCCGGTGCCGGTGCGGGAGCCGCGTACGCCCTCCGGGTGGCTGAGGCTGATCGGAGTCGACCGGCAC
AATGTGCGCGGGGTCGACGCCGCGTTCCCGCTCGGGGTGTTCACGGCGGTCACCGGTGTCTCCGGCTCGGGCAAATCGAC
CCTGGTCGGCCAGGTCCTCGCCGGGGCCCTGGCCGACCGGCAGGCATCCACCACCGCCGATCTCCCTGCCGAGCGGCCAG
TGCCGGGGTGCGCATCGGCGCTCGGGCTGGAGGCGGTGGACCGTCTCGTCCAGGTCGACCAGCGGCCGATCGGCCGTACG
CCGCGCTCCAACCTGGCCACGTACACCGGGCTTTTCGATGTCGTACGGAAGCTGTTCACCGCGACCGACATGGCGCGCGA
GCGCGGCTACCGGGCGGGGCGGTTCTCGTTCAATGTGGCGGGCGGGCGGTGCGAGACCTGTCAGGGCGAGGGGTTCGTCT
CCGTCGAGCTGCTCTTCCTGCCGAGTACGTATGCGCCCTGCCCGGACTGTCACGGGGCGCGGTACAACCCGCAGACGCTG
GAGGTGACTCTGCGCGGGCTGAACATTGCGCAGGTGCTGGACCTGACGGTGGCGTCGGCGGCCGGCTTCTTCGCGGGGAC
CCCCGCCGCGGAGCGCAGTCTGCGGACGCTGATCGATGTCGGGCTCGGCTATCTGCGGCTGGGGCAGCCGGCGACGGAGT
TGTCCGGTGGTGAGGCACAGCGGATCAAGCTGGCCACCGAGCTGCAGCGCACCCGTCGGGGTCACACCCTGTATCTGCTC
GACGAGCCGACCACGGGTCTGCATCCGGCCGACGTCGAGGTGCTGATGCGGCAGCTGCACGGGCTGGTCGACGGGGGCAG
CACGGTGGTGGTCGTGGAGCACGACATGGCGGTCGTCGCGGCCGCCGACTGGGTGATCGATCTCGGTCCGGGCGGCGGGG
ACCGGGGCGGCCGGATCGTCGCCACGGGACCGCCGACGGATGTGGCGGGTGCGGCGGACAGCCGGACGGCACCGTACCTG
TCGGCGGCGCTCCGACCGGGCTGA

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(159-265)

ABC transporter (ABC_tran)

(484-724)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

41.98

88.848

0.373
  uvrA Streptococcus pneumoniae TIGR4

41.98

88.848

0.373
  uvrA Streptococcus pneumoniae D39

41.98

88.848

0.373