Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG957_RS05890 Genome accession   NZ_CP109174
Coordinates   1300053..1301054 (+) Length   333 a.a.
NCBI ID   WP_327129270.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01718     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1295053..1306054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG957_RS05870 (OG957_05895) - 1295400..1296302 (-) 903 WP_327128062.1 hypothetical protein -
  OG957_RS05875 (OG957_05900) - 1296784..1298073 (+) 1290 WP_327128061.1 ABC transporter substrate-binding protein -
  OG957_RS05880 (OG957_05905) - 1298106..1299047 (+) 942 WP_327128060.1 sugar ABC transporter permease -
  OG957_RS05885 (OG957_05910) - 1299061..1299888 (+) 828 WP_327128059.1 carbohydrate ABC transporter permease -
  OG957_RS05890 (OG957_05915) cytR 1300053..1301054 (+) 1002 WP_327129270.1 LacI family DNA-binding transcriptional regulator Regulator
  OG957_RS05895 (OG957_05920) - 1301201..1303135 (+) 1935 WP_327128058.1 cellulase family glycosylhydrolase -
  OG957_RS05900 (OG957_05925) - 1303285..1305621 (+) 2337 WP_327128057.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34938.93 Da        Isoelectric Point: 6.3931

>NTDB_id=672022 OG957_RS05890 WP_327129270.1 1300053..1301054(+) (cytR) [Streptomyces sp. NBC_01718]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMTQESALYERLVAEGRIDGAVLTDARADDPRPQLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
GAGVREAVAHLLELGHRRLAYIAGPADLVHTRLRLAAFEEALAEAGLRPVAVRHTDFTEEAAVAVTEELLALPDRPTALV
FPNDSMAVCGIGTAQRSGLRVPGEVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGEDVPPPVLDGRPRL
VVRESTGPVPSAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=672022 OG957_RS05890 WP_327129270.1 1300053..1301054(+) (cytR) [Streptomyces sp. NBC_01718]
GTGGCCGCCGCGGCAGGGGTCTCCACCGCTGCGGTCTCCCAGGCTGTCAACGGCACGGGGCGGATCTCGGAGGCCACCCG
CCGCCGGGTCCTGGACGCGGCTGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCGACAGCCCTGCGCCGGGCACGGACCC
GGACGATCGCGCTCGTCGTGCGACGCCCCACGGACGTGCTCGGTGCCGACCCGCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCGCCCAGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGACCCAGGAGAGCGCGCTGTACGA
GCGGCTGGTCGCCGAAGGCCGGATCGACGGTGCCGTGCTGACCGACGCACGGGCGGACGATCCGCGCCCGCAGCTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGCGCACCGGATCCCGCGTCGCCGGTTCCCGGCGTCGGCCTCGGGCAGCAG
GGCGCCGGTGTCCGTGAGGCCGTCGCACACCTCCTGGAGCTCGGCCACCGGCGTCTCGCGTACATCGCGGGTCCGGCCGA
CCTGGTGCACACCAGGCTGCGTCTGGCCGCCTTCGAGGAAGCCCTCGCGGAGGCGGGTCTGCGGCCCGTCGCCGTCCGGC
ACACCGATTTCACGGAGGAGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCTCTGCCCGACCGGCCGACCGCTCTGGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCCCAGCGCAGCGGGCTCCGGGTGCCCGGGGAGGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACCACCGTGGACCAGCAGGTGCAACGTGTCG
GTGCGGCGGCCGCCCGCACGCTGCTCGTCCGGTGCGGTGAAGACGTACCCCCGCCGGTCCTCGACGGACGTCCGCGCCTG
GTCGTACGGGAGTCGACCGGTCCCGTGCCGTCCGCGCCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.336

100

0.363