Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE75_RS27560 Genome accession   NZ_CP109171
Coordinates   5942132..5942911 (-) Length   259 a.a.
NCBI ID   WP_122618505.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01723     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5937132..5947911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE75_RS27545 (OIE75_27575) - 5937320..5939092 (+) 1773 WP_329472400.1 IucA/IucC family protein -
  OIE75_RS27550 (OIE75_27580) - 5939169..5939825 (+) 657 WP_307015458.1 GNAT family N-acetyltransferase -
  OIE75_RS27555 (OIE75_27585) - 5939992..5942010 (+) 2019 WP_329472403.1 ATP-dependent DNA helicase -
  OIE75_RS27560 (OIE75_27590) dinR/lexA 5942132..5942911 (-) 780 WP_122618505.1 transcriptional repressor LexA Regulator
  OIE75_RS27565 (OIE75_27595) nrdR 5943474..5944031 (+) 558 WP_122618504.1 transcriptional regulator NrdR -
  OIE75_RS27570 (OIE75_27600) - 5944199..5947102 (+) 2904 WP_307015460.1 vitamin B12-dependent ribonucleotide reductase -
  OIE75_RS27575 (OIE75_27605) - 5947175..5947708 (-) 534 WP_307015461.1 TerD family protein -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 27902.55 Da        Isoelectric Point: 7.0665

>NTDB_id=672000 OIE75_RS27560 WP_122618505.1 5942132..5942911(-) (dinR/lexA) [Streptomyces sp. NBC_01723]
MTTTADSATITGQDRPQGRPEPAHAMSDAANPEGHKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQAASVQPTDTAGKPAASYVPLVGRIAAGGPILAEESVED
VFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNSAYEP
IPGDDATILGKVVAVLRRV

Nucleotide


Download         Length: 780 bp        

>NTDB_id=672000 OIE75_RS27560 WP_122618505.1 5942132..5942911(-) (dinR/lexA) [Streptomyces sp. NBC_01723]
GTGACCACCACCGCCGACAGTGCCACCATCACTGGCCAGGACCGCCCCCAGGGCCGACCTGAGCCGGCGCACGCGATGAG
CGACGCCGCGAATCCCGAGGGACACAAGCGCTCCCTACCGGGCCGACCTCCCGGCATCCGGGCGGACAGCTCGGGGCTCA
CCGACCGCCAGCGCCGGGTGATCGAGGTCATCCGCGACTCCGTGCAGCGCCGCGGATACCCGCCGTCGATGCGGGAGATC
GGGCAGGCCGTCGGCCTCTCCAGCACCTCCTCCGTCGCGCACCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGCCCGCGCGCCTACGAGGTGCGCGGCTCCGACCAGGCCGCCAGCGTGCAGCCGACGGACACGGCAGGGA
AGCCGGCCGCGTCGTACGTCCCGCTCGTCGGCCGCATCGCCGCCGGTGGCCCGATCCTCGCCGAGGAGTCCGTCGAGGAC
GTCTTCCCGCTCCCCCGGCAGCTGGTCGGTGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGCGACTCGATGATCGAGGC
CGCCATCTGCGACGGCGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCCGAGAACGGCGACATCGTCGCCGCGATGCTCG
ACGGCGAGGCCACCGTCAAGCGCTTCAAGCGCGAGGACGGCCACGTCTGGCTGCTCCCGCACAACTCGGCCTACGAGCCG
ATCCCCGGTGACGACGCGACCATCCTCGGCAAGGTGGTGGCCGTACTGCGTCGCGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(141-253)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.972

81.467

0.375