Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE75_RS04535 Genome accession   NZ_CP109171
Coordinates   959660..959881 (-) Length   73 a.a.
NCBI ID   WP_329469649.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01723     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954660..964881
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE75_RS04510 (OIE75_04520) - 955448..956002 (+) 555 WP_307009860.1 DUF5134 domain-containing protein -
  OIE75_RS04515 (OIE75_04525) - 956151..957086 (+) 936 WP_307009862.1 M56 family metallopeptidase -
  OIE75_RS04520 (OIE75_04530) - 957153..957824 (+) 672 WP_307009865.1 phosphatase PAP2 family protein -
  OIE75_RS04525 (OIE75_04535) - 957866..958573 (+) 708 WP_329469647.1 HAD-IA family hydrolase -
  OIE75_RS04530 (OIE75_04540) - 959454..959651 (-) 198 WP_329469648.1 hypothetical protein -
  OIE75_RS04535 (OIE75_04545) dinR/lexA 959660..959881 (-) 222 WP_329469649.1 MarR family transcriptional regulator Regulator
  OIE75_RS04540 (OIE75_04550) - 959927..960079 (+) 153 WP_329469650.1 DUF6233 domain-containing protein -
  OIE75_RS04545 (OIE75_04555) - 960166..960594 (+) 429 WP_307009874.1 hypothetical protein -
  OIE75_RS04550 (OIE75_04560) - 960682..961131 (+) 450 WP_329469651.1 nuclear transport factor 2 family protein -
  OIE75_RS04555 (OIE75_04565) - 961246..961872 (-) 627 WP_329469653.1 DUF6000 family protein -
  OIE75_RS04560 (OIE75_04570) - 962047..962295 (+) 249 WP_241000106.1 hypothetical protein -
  OIE75_RS04565 (OIE75_04575) - 962335..962652 (-) 318 Protein_912 transposase -
  OIE75_RS04570 (OIE75_04580) - 963257..963940 (+) 684 WP_329469654.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 73 a.a.        Molecular weight: 8135.30 Da        Isoelectric Point: 8.6405

>NTDB_id=671937 OIE75_RS04535 WP_329469649.1 959660..959881(-) (dinR/lexA) [Streptomyces sp. NBC_01723]
MVRRKVEYLTDTQERILGAIRAAITEQGEAPTVAEIASTVDLRPSSVHYQLRELEAKGAIAREPHQPRGIRLA

Nucleotide


Download         Length: 222 bp        

>NTDB_id=671937 OIE75_RS04535 WP_329469649.1 959660..959881(-) (dinR/lexA) [Streptomyces sp. NBC_01723]
ATGGTCAGACGCAAGGTCGAGTACCTCACCGACACCCAGGAGCGGATCCTCGGCGCCATCCGCGCGGCCATCACCGAGCA
GGGCGAGGCCCCCACCGTCGCCGAGATCGCCTCCACGGTGGATCTGCGGCCGTCATCAGTGCACTATCAGCTGCGCGAGC
TGGAAGCGAAGGGCGCCATCGCCCGCGAGCCGCACCAGCCGCGTGGAATCCGACTCGCATGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(8-69)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

43.077

89.041

0.384