Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   KNN_RS23010 Genome accession   NZ_AP014864
Coordinates   4494369..4494692 (+) Length   107 a.a.
NCBI ID   WP_000578885.1    Uniprot ID   A0A9W5VG71
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 4489369..4499692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS22995 (KNN_04747) - 4489883..4491250 (-) 1368 WP_000028375.1 aldehyde dehydrogenase -
  KNN_RS23000 (KNN_04748) inhA1 4491422..4493812 (-) 2391 WP_001035936.1 M6 family metalloprotease immune inhibitor InhA1 -
  KNN_RS23005 (KNN_04749) - 4494155..4494289 (+) 135 WP_000276219.1 anti-repressor SinI family protein -
  KNN_RS23010 (KNN_04750) sinR 4494369..4494692 (+) 324 WP_000578885.1 helix-turn-helix domain-containing protein Regulator
  KNN_RS23015 (KNN_04751) calY 4494765..4495358 (-) 594 WP_000053713.1 biofilm matrix protein CalY -
  KNN_RS23020 (KNN_04752) - 4495744..4496586 (-) 843 WP_060852288.1 DUF4047 domain-containing protein -
  KNN_RS23025 (KNN_04753) - 4496721..4497308 (-) 588 WP_000172852.1 CalY family protein -
  KNN_RS23030 (KNN_04754) - 4497369..4497938 (-) 570 WP_000767792.1 signal peptidase I -
  KNN_RS37450 - 4498183..4499378 (+) 1196 Protein_4660 IS3 family transposase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12349.19 Da        Isoelectric Point: 9.6244

>NTDB_id=67189 KNN_RS23010 WP_000578885.1 4494369..4494692(+) (sinR) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETTKETNLDSEWTQLV
KDAMNSGVSKEQFREFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=67189 KNN_RS23010 WP_000578885.1 4494369..4494692(+) (sinR) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGGATTTCATTAACTGAACTTGCCGAAAAAGCTGGCGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAGATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGATGAAACAACAAAGGAAACTAACCTAGACTCCGAATGGACACAACTCGTT
AAAGATGCAATGAACTCTGGTGTCTCCAAAGAACAATTTCGTGAATTTCTTGAATTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

67.89

100

0.692

Multiple sequence alignment