Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   KNN_RS21655 Genome accession   NZ_AP014864
Coordinates   4245471..4246073 (+) Length   200 a.a.
NCBI ID   WP_000155598.1    Uniprot ID   A0A9W5VGG2
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4240471..4251073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS21615 (KNN_04472) gpsB 4240643..4240978 (-) 336 WP_000622431.1 cell division regulator GpsB -
  KNN_RS21620 (KNN_04473) - 4241076..4241630 (-) 555 WP_000862908.1 DUF1273 domain-containing protein -
  KNN_RS21625 (KNN_04474) - 4241687..4242091 (-) 405 WP_060852261.1 CotD family spore coat protein -
  KNN_RS21630 (KNN_04475) - 4242247..4242927 (-) 681 WP_060852262.1 YppG family protein -
  KNN_RS21635 (KNN_04476) - 4243105..4243296 (+) 192 WP_000242652.1 YppF family protein -
  KNN_RS21640 (KNN_04477) - 4243323..4243667 (-) 345 WP_017673007.1 YppE family protein -
  KNN_RS21645 (KNN_04478) - 4243683..4243925 (-) 243 WP_001252036.1 hypothetical protein -
  KNN_RS39260 - 4244011..4244190 (+) 180 WP_001987054.1 hypothetical protein -
  KNN_RS21650 (KNN_04479) - 4244342..4245367 (-) 1026 WP_000495658.1 DUF2515 domain-containing protein -
  KNN_RS21655 (KNN_04480) recU 4245471..4246073 (+) 603 WP_000155598.1 Holliday junction resolvase RecU Machinery gene
  KNN_RS21660 (KNN_04481) - 4246140..4248839 (+) 2700 WP_060852263.1 PBP1A family penicillin-binding protein -
  KNN_RS21665 (KNN_04482) - 4248866..4249384 (-) 519 WP_000442652.1 YpoC family protein -
  KNN_RS21670 (KNN_04483) nth 4249388..4250035 (-) 648 WP_000933034.1 endonuclease III -
  KNN_RS21675 (KNN_04484) dnaD 4250051..4250758 (-) 708 WP_000728552.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23355.63 Da        Isoelectric Point: 9.4336

>NTDB_id=67187 KNN_RS21655 WP_000155598.1 4245471..4246073(+) (recU) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MTIRYPNGKRYNQASQPQKTPIKTHTYSNRGMSLEEELNETNQYYLTHNIACVHKKPTPLQIVKVDYPARSAAVVKEAYF
KQPSTTDYNGVYKGKYIDFEAKETKNKTSFPLQNFHLHQIEHMKQVVAHNGIAFVIIKFTLFDEFYLLDAKHIIAFWNRQ
NTGGRKSITKEEIEEHGSLLSCGYHPRIDYIRVLDMVYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=67187 KNN_RS21655 WP_000155598.1 4245471..4246073(+) (recU) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGACCATTCGTTACCCAAATGGAAAAAGGTATAATCAAGCTTCACAACCTCAAAAAACACCTATAAAAACACATACTTA
TAGTAATAGAGGTATGTCCCTTGAAGAGGAATTGAATGAAACAAATCAATATTACTTAACCCATAATATTGCATGTGTAC
ATAAAAAGCCTACACCTCTTCAAATTGTAAAAGTAGATTACCCCGCTCGAAGTGCTGCAGTGGTAAAAGAAGCGTATTTT
AAACAACCTTCTACAACAGATTACAACGGTGTATACAAAGGGAAATACATCGATTTTGAAGCAAAGGAAACAAAAAATAA
AACTAGTTTCCCACTTCAAAACTTCCACCTTCATCAAATTGAACATATGAAGCAAGTGGTTGCTCATAATGGAATTGCAT
TTGTTATTATTAAATTTACACTTTTTGATGAATTTTATTTACTAGATGCAAAACATATTATTGCATTTTGGAATCGTCAA
AATACTGGTGGACGCAAGTCAATTACGAAAGAAGAAATAGAAGAGCATGGATCCTTATTATCATGCGGTTATCACCCTCG
GATTGACTATATCCGTGTACTAGACATGGTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

63.5

100

0.635

Multiple sequence alignment