Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   KNN_RS19195 Genome accession   NZ_AP014864
Coordinates   3752902..3753189 (-) Length   95 a.a.
NCBI ID   WP_000648324.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3747902..3758189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS19160 (KNN_03965) - 3748949..3749476 (-) 528 WP_000687340.1 DinB family protein -
  KNN_RS19165 (KNN_03966) - 3749673..3750020 (+) 348 WP_000426317.1 DUF4257 domain-containing protein -
  KNN_RS19170 (KNN_03967) - 3750105..3750329 (+) 225 WP_000162602.1 hypothetical protein -
  KNN_RS19175 (KNN_03968) - 3750529..3750891 (-) 363 WP_001198796.1 DUF805 domain-containing protein -
  KNN_RS39255 (KNN_03969) - 3751035..3751241 (-) 207 WP_001100443.1 hypothetical protein -
  KNN_RS19185 (KNN_03970) - 3751290..3751637 (-) 348 Protein_3891 MFS transporter -
  KNN_RS19190 (KNN_03971) - 3751679..3752626 (-) 948 WP_060852189.1 serine protease -
  KNN_RS19195 (KNN_03972) abrB 3752902..3753189 (-) 288 WP_000648324.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  KNN_RS19200 (KNN_03973) - 3753306..3755186 (-) 1881 WP_017656811.1 ABC transporter permease -
  KNN_RS19205 (KNN_03974) nadE 3755457..3756275 (+) 819 WP_000174904.1 ammonia-dependent NAD(+) synthetase -
  KNN_RS19210 (KNN_03975) - 3756325..3756786 (-) 462 WP_000024992.1 NUDIX hydrolase -
  KNN_RS19215 (KNN_03976) - 3756818..3757015 (-) 198 WP_002183486.1 DUF4083 domain-containing protein -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 10587.32 Da        Isoelectric Point: 4.8408

>NTDB_id=67186 KNN_RS19195 WP_000648324.1 3752902..3753189(-) (abrB) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MKATGVIRKVDELGRIVIPKELRDVLGIQIKSPLEIFVEADKIILQKYQPYNACQITGDVSEQNISLANGNITVGIEGAE
YLVKEIEKFLNKSEV

Nucleotide


Download         Length: 288 bp        

>NTDB_id=67186 KNN_RS19195 WP_000648324.1 3752902..3753189(-) (abrB) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGAAAGCAACAGGAGTTATTCGAAAAGTAGACGAATTAGGACGAATTGTTATCCCTAAAGAATTACGCGATGTATTGGG
AATACAAATCAAATCACCGCTTGAAATTTTTGTAGAAGCAGATAAAATCATTTTACAAAAATATCAACCTTACAATGCTT
GCCAAATCACAGGTGATGTTTCAGAGCAGAACATATCATTAGCAAATGGAAATATTACTGTTGGGATAGAGGGAGCGGAA
TATTTAGTAAAAGAAATAGAAAAGTTTTTAAACAAGAGTGAGGTTTAG

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.556

94.737

0.526

Multiple sequence alignment