Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OIE71_RS00060 Genome accession   NZ_CP109167
Coordinates   10800..10988 (-) Length   62 a.a.
NCBI ID   WP_329039103.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01725     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5800..15988
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE71_RS00035 (OIE71_00035) - 6485..7423 (+) 939 WP_329031230.1 amidohydrolase family protein -
  OIE71_RS00040 (OIE71_00040) - 7578..8045 (-) 468 WP_329031232.1 MarR family transcriptional regulator -
  OIE71_RS00045 (OIE71_00045) - 8100..8807 (-) 708 WP_329031233.1 DJ-1/PfpI family protein -
  OIE71_RS00050 (OIE71_00050) - 9109..9696 (-) 588 WP_329031235.1 hypothetical protein -
  OIE71_RS00055 (OIE71_00055) - 9920..10282 (-) 363 WP_329031237.1 hypothetical protein -
  OIE71_RS00060 (OIE71_00060) dinR/lexA 10800..10988 (-) 189 WP_329039103.1 hypothetical protein Regulator
  OIE71_RS00065 (OIE71_00065) - 11012..11245 (-) 234 WP_329031239.1 hypothetical protein -
  OIE71_RS00070 (OIE71_00070) - 11999..13300 (+) 1302 WP_329031241.1 vanadium-dependent haloperoxidase -
  OIE71_RS00075 (OIE71_00075) - 13746..14330 (-) 585 WP_329031243.1 hypothetical protein -
  OIE71_RS00080 (OIE71_00080) - 14832..15884 (-) 1053 WP_329031244.1 hypothetical protein -

Sequence

Protein


Download         Length: 62 a.a.        Molecular weight: 6744.76 Da        Isoelectric Point: 10.8154

>NTDB_id=671772 OIE71_RS00060 WP_329039103.1 10800..10988(-) (dinR/lexA) [Streptomyces sp. NBC_01725]
MEILRAIRGWIAEHGEGPSVREIGALVGLSSTASVAYQLGRMEELGIISRGARRWHSVRLGS

Nucleotide


Download         Length: 189 bp        

>NTDB_id=671772 OIE71_RS00060 WP_329039103.1 10800..10988(-) (dinR/lexA) [Streptomyces sp. NBC_01725]
ATGGAGATCCTGCGGGCGATCAGGGGCTGGATCGCGGAGCATGGCGAGGGCCCCTCGGTCCGGGAGATCGGTGCCCTGGT
CGGCTTGTCCAGCACCGCCTCGGTCGCCTACCAGCTCGGCCGGATGGAGGAGCTGGGGATAATCAGCCGCGGCGCCCGGC
GCTGGCACTCCGTCCGGCTCGGGAGCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(2-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

38.333

96.774

0.371