Detailed information NTG0671772

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: MUA20_RS10495
• Genome accession: NZ_CP094742
• Coordinates: 2076244..2077617 (-)
• Length: 457 a.a.
• NCBI ID: WP_262621045.1
• Uniprot ID: -
• Organism: Staphylococcus chromogenes strain IVB6199
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2071244..2082617

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MUA20_RS10470 (MUA20_10420)	cysE	2071496..2072134 (-)	639	WP_258026740.1	serine O-acetyltransferase	-
MUA20_RS10475 (MUA20_10425)	gltX	2072462..2073916 (-)	1455	WP_262621042.1	glutamate--tRNA ligase	-
MUA20_RS10480 (MUA20_10430)	ispF	2073993..2074472 (-)	480	WP_037572986.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MUA20_RS10485 (MUA20_10435)	ispD	2074465..2075163 (-)	699	WP_262621043.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MUA20_RS10490 (MUA20_10440)	-	2075163..2076227 (-)	1065	WP_262621044.1	PIN/TRAM domain-containing protein	-
MUA20_RS10495 (MUA20_10445)	radA	2076244..2077617 (-)	1374	WP_262621045.1	DNA repair protein RadA	Machinery gene
MUA20_RS10500 (MUA20_10450)	-	2077744..2080230 (-)	2487	WP_262621046.1	ATP-dependent Clp protease ATP-binding subunit	-
MUA20_RS10505 (MUA20_10455)	-	2080243..2081247 (-)	1005	WP_037573001.1	protein arginine kinase	-
MUA20_RS10510 (MUA20_10460)	-	2081231..2081737 (-)	507	WP_394371036.1	UvrB/UvrC motif-containing protein	-
MUA20_RS10515 (MUA20_10465)	-	2081782..2082243 (-)	462	WP_105985693.1	CtsR family transcriptional regulator	-

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 50257.89 Da
• Isoelectric Point: 7.9984

>NTDB_id=671772 MUA20_RS10495 WP_262621045.1 2076244..2077617(-) (radA) [Staphylococcus chromogenes strain IVB6199]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRAQKTTQSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFNRVIIPKTNIGGWTFPENIEVIGVTSTKEALKYALKSK

Nucleotide

• Length: 1374 bp

>NTDB_id=671772 MUA20_RS10495 WP_262621045.1 2076244..2077617(-) (radA) [Staphylococcus chromogenes strain IVB6199]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAGACAGCACACCCGAAACATGGGGTACGTGCACAAAAGACGA
CACAATCAAAAATTCAAACGCTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTTCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTGCGTTATCAAAAGAAAAGAAAGTGCTATATATTACTGGGGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCGAGTGCTTTAAATGTATTTGCAGAAACGGATTTAGAGGTGATTCATGAAGCA
GTGAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATTCAAACGATTTATCACCCAGAAATTAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCATGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTATTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGTGTCCCGAATCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCGGGGTCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTCCAAGCCCTCGTCACACCGACCACATTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAATCGTTTAAGTCTGTTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGCGTCAAATTAAGCGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGCGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAACCGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACCTTCCCAGAAAACATTGAAGTTATCGGTGTGACCTCAACAAAAGAAGCATTAAAATATGCTT
TGAAATCTAAATAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (345-428)

• AAA domain (AAA_25) (70-220)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	65.789	99.781	0.656
radA	Streptococcus pneumoniae Rx1	59.956	98.906	0.593
radA	Streptococcus pneumoniae D39	59.956	98.906	0.593
radA	Streptococcus pneumoniae R6	59.956	98.906	0.593
radA	Streptococcus pneumoniae TIGR4	59.956	98.906	0.593
radA	Streptococcus mitis NCTC 12261	59.956	98.906	0.593
radA	Streptococcus mitis SK321	59.956	98.906	0.593