Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OIE76_RS35200 Genome accession   NZ_CP109163
Coordinates   7880235..7881236 (-) Length   333 a.a.
NCBI ID   WP_327129270.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01727     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 7875235..7886236
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE76_RS35190 (OIE76_35245) - 7875687..7878023 (-) 2337 WP_327128057.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OIE76_RS35195 (OIE76_35250) - 7878154..7880088 (-) 1935 WP_327128058.1 cellulase family glycosylhydrolase -
  OIE76_RS35200 (OIE76_35255) cytR 7880235..7881236 (-) 1002 WP_327129270.1 LacI family DNA-binding transcriptional regulator Regulator
  OIE76_RS35205 (OIE76_35260) - 7881401..7882228 (-) 828 WP_327128059.1 carbohydrate ABC transporter permease -
  OIE76_RS35210 (OIE76_35265) - 7882242..7883183 (-) 942 WP_327128060.1 sugar ABC transporter permease -
  OIE76_RS35215 (OIE76_35270) - 7883216..7884505 (-) 1290 WP_327128061.1 ABC transporter substrate-binding protein -
  OIE76_RS35220 (OIE76_35275) - 7884987..7885889 (+) 903 WP_327128062.1 hypothetical protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34938.93 Da        Isoelectric Point: 6.3931

>NTDB_id=671764 OIE76_RS35200 WP_327129270.1 7880235..7881236(-) (cytR) [Streptomyces sp. NBC_01727]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMTQESALYERLVAEGRIDGAVLTDARADDPRPQLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
GAGVREAVAHLLELGHRRLAYIAGPADLVHTRLRLAAFEEALAEAGLRPVAVRHTDFTEEAAVAVTEELLALPDRPTALV
FPNDSMAVCGIGTAQRSGLRVPGEVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGEDVPPPVLDGRPRL
VVRESTGPVPSAP

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=671764 OIE76_RS35200 WP_327129270.1 7880235..7881236(-) (cytR) [Streptomyces sp. NBC_01727]
GTGGCCGCCGCGGCAGGGGTCTCCACCGCTGCGGTCTCCCAGGCTGTCAACGGCACGGGGCGGATCTCGGAGGCCACCCG
CCGCCGGGTCCTGGACGCGGCTGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCGACAGCCCTGCGCCGGGCACGGACCC
GGACGATCGCGCTCGTCGTGCGACGCCCCACGGACGTGCTCGGTGCCGACCCGCACTTCAGCGAGCTGATCACCGGTCTG
GAGGGCGAACTGGCGCCCAGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGACCCAGGAGAGCGCGCTGTACGA
GCGGCTGGTCGCCGAAGGCCGGATCGACGGTGCCGTGCTGACCGACGCACGGGCGGACGATCCGCGCCCGCAGCTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGCGCACCGGATCCCGCGTCGCCGGTTCCCGGCGTCGGCCTCGGGCAGCAG
GGCGCCGGTGTCCGTGAGGCCGTCGCACACCTCCTGGAGCTCGGCCACCGGCGTCTCGCGTACATCGCGGGTCCGGCCGA
CCTGGTGCACACCAGGCTGCGTCTGGCCGCCTTCGAGGAAGCCCTCGCGGAGGCGGGTCTGCGGCCCGTCGCCGTCCGGC
ACACCGATTTCACGGAGGAGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCTCTGCCCGACCGGCCGACCGCTCTGGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCCCAGCGCAGCGGGCTCCGGGTGCCCGGGGAGGTGTCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACCACCGTGGACCAGCAGGTGCAACGTGTCG
GTGCGGCGGCCGCCCGCACGCTGCTCGTCCGGTGCGGTGAAGACGTACCCCCGCCGGTCCTCGACGGACGTCCGCGCCTG
GTCGTACGGGAGTCGACCGGTCCCGTGCCGTCCGCGCCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.336

100

0.363