Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA20_RS03665 Genome accession   NZ_CP094742
Coordinates   751994..752716 (-) Length   240 a.a.
NCBI ID   WP_262621730.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6199     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 746994..757716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA20_RS03645 (MUA20_03620) - 747962..748609 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  MUA20_RS03650 (MUA20_03625) - 748781..749863 (+) 1083 WP_262621728.1 YeeE/YedE family protein -
  MUA20_RS03655 (MUA20_03630) - 749885..750109 (+) 225 WP_037575670.1 sulfurtransferase TusA family protein -
  MUA20_RS03660 (MUA20_03635) - 750456..751940 (+) 1485 WP_262621729.1 sucrose-6-phosphate hydrolase -
  MUA20_RS03665 (MUA20_03640) agrA 751994..752716 (-) 723 WP_262621730.1 quorum-sensing response regulator AgrA Regulator
  MUA20_RS03670 (MUA20_03645) agrC 752731..754029 (-) 1299 WP_394371046.1 quorum-sensing sensor histidine kinase AgrC -
  MUA20_RS03675 (MUA20_03650) agrD 754061..754195 (-) 135 WP_105986645.1 cyclic lactone autoinducer peptide AgrD -
  MUA20_RS03680 (MUA20_03655) - 754200..754763 (-) 564 WP_262621732.1 accessory gene regulator AgrB -
  MUA20_RS03685 (MUA20_03660) - 755411..756208 (-) 798 WP_262621733.1 carbon-nitrogen family hydrolase -
  MUA20_RS03690 (MUA20_03665) - 756388..757488 (+) 1101 WP_262621734.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28254.32 Da        Isoelectric Point: 5.4084

>NTDB_id=671750 MUA20_RS03665 WP_262621730.1 751994..752716(-) (agrA) [Staphylococcus chromogenes strain IVB6199]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVINCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=671750 MUA20_RS03665 WP_262621730.1 751994..752716(-) (agrA) [Staphylococcus chromogenes strain IVB6199]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTACTCGAAGCTTCTAAAAACATGAATGATATTG
GTTGTTATTTTTTAGATATTCAACTCGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGTAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATTTAACATTCGTATACAAATTGGCGGCCATGGATTT
TATTTTTAAAGATGATGTCGATGAGTTACGCACGCGAGTCATTAATTGTCTTGAAACAGCTTTAAAACGTCTTGATTTGC
TTACTAAAGATAATACGGTTGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGACGATGTTATG
TTTTTTGAATCCTCTCCAAAATCACATCGTCTTATTGCACATTTAGATAATCGTCAAATTGAATTTTATGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGTTGTCATAATAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATAGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTAAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.513

99.167

0.808