Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA19_RS10390 Genome accession   NZ_CP094741
Coordinates   2147635..2149008 (-) Length   457 a.a.
NCBI ID   WP_262616681.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2142635..2154008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS10365 (MUA19_10345) cysE 2142887..2143537 (-) 651 WP_259335918.1 serine O-acetyltransferase -
  MUA19_RS10370 (MUA19_10350) gltX 2143853..2145307 (-) 1455 WP_262616678.1 glutamate--tRNA ligase -
  MUA19_RS10375 (MUA19_10355) ispF 2145384..2145863 (-) 480 WP_262616679.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA19_RS10380 (MUA19_10360) ispD 2145856..2146554 (-) 699 WP_262616680.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA19_RS10385 (MUA19_10365) - 2146554..2147618 (-) 1065 WP_105985697.1 PIN/TRAM domain-containing protein -
  MUA19_RS10390 (MUA19_10370) radA 2147635..2149008 (-) 1374 WP_262616681.1 DNA repair protein RadA Machinery gene
  MUA19_RS10395 (MUA19_10375) - 2149135..2151621 (-) 2487 WP_262616682.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA19_RS10400 (MUA19_10380) - 2151634..2152638 (-) 1005 WP_105985694.1 protein arginine kinase -
  MUA19_RS10405 (MUA19_10385) - 2152622..2153128 (-) 507 WP_051604952.1 UvrB/UvrC motif-containing protein -
  MUA19_RS10410 (MUA19_10390) - 2153173..2153634 (-) 462 WP_105985693.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50354.96 Da        Isoelectric Point: 8.0064

>NTDB_id=671740 MUA19_RS10390 WP_262616681.1 2147635..2149008(-) (radA) [Staphylococcus chromogenes strain IVB6200]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNSMEESLEQKTAHPKHGVRTQKTTHSKIQTLNEVKNEKTPRILTNSQEFN
RVLGGGIVQGSLVLIGGDPGIGKSTLLLQMCATLSKEKKVLYITGEESLNQTKLRADRLDEDASALNVFAETDLEVIHEA
VKKVQPELIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQAGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLSIIIATASSFKDQAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPENIEVIGVTSTNEALKYALKSR

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=671740 MUA19_RS10390 WP_262616681.1 2147635..2149008(-) (radA) [Staphylococcus chromogenes strain IVB6200]
GTGGCCAAGAAAAAAGTCATATTTGAATGTACTGCATGTGGTTATCAATCTCCGAAGTGGATGGGGAAATGTCCTAACTG
TGGCGCATGGAATTCCATGGAAGAATCGTTAGAACAAAAAACAGCACACCCAAAACACGGGGTACGTACACAAAAGACGA
CACATTCAAAAATTCAAACACTCAACGAAGTAAAGAATGAAAAAACACCACGTATTTTAACGAATAGCCAAGAGTTTAAC
CGTGTTTTAGGTGGCGGTATTGTCCAAGGTTCTCTTGTTTTAATCGGAGGAGACCCAGGGATAGGAAAGTCAACATTGTT
ACTTCAAATGTGCGCTACGTTATCAAAAGAAAAGAAAGTCCTATATATTACTGGGGAAGAATCATTAAACCAAACTAAAT
TACGTGCCGATCGTTTAGATGAAGATGCGAGTGCTTTAAACGTATTTGCAGAAACAGATTTAGAGGTGATTCATGAAGCA
GTGAAAAAAGTACAACCCGAGCTCATCGTTGTAGACTCTATACAAACGATTTATCACCCAGAAATCAGTTCTGCACCTGG
TTCTGTGTCTCAGGTACGTGAAAGTACACAAAGTTTAATGCATATTGCCAAACAGATGAATATTGCCACGTTTATCGTGG
GGCACGTGACAAAAGAAGGACAAATTGCGGGTCCTAGATTGTTAGAACATATGGTGGATACCGTGCTTTATTTTGAAGGT
GATGAGCATCATGCTTATCGTATTTTACGTGCGGTGAAAAACCGCTTTGGTTCAACGAATGAAATGGGCATTTTTGAAAT
GAAACAAGCAGGTCTTAAAAGCGTCCCAAACCCTTCTGAAATGTTTTTAGAAGAGCGATCAACGAATGTTCCAGGATCGA
CGATTGTCGCCACTATGGAAGGGACACGTCCGCTATTAATAGAAGTTCAAGCCCTTGTTACACCAACCACGTTTAATAAT
CCTAGACGAATGGCGACGGGGATTGATCACAACCGTTTAAGTTTGTTGATGGCCGTATTAGAGAAAAAAGAGGGGTATCT
GTTACAACAACAAGATGCCTACATCAAAGTGGCAGGTGGCGTCAAATTAAGCGAACCTGCTGTGGATTTAAGCATCATTA
TTGCGACAGCCTCAAGCTTTAAAGACCAAGCCGTTGATGGGTTAGACTGTTTTATTGGTGAAGTTGGTTTGACAGGTGAG
GTACGCCGTGTCTCTCGAATTGAGCAAAGAGTTCAAGAAGCAGCAAAATTAGGGTTTAAACGTGTGATTATACCGAAAAC
GAATATTGGGGGATGGACTTTCCCAGAAAACATTGAAGTTATCGGTGTAACCTCAACAAACGAAGCATTAAAATATGCTT
TGAAATCTAGATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

AAA domain (AAA_25)

(70-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.009

99.781

0.659
  radA Streptococcus pneumoniae Rx1

59.867

98.687

0.591
  radA Streptococcus pneumoniae D39

59.867

98.687

0.591
  radA Streptococcus pneumoniae R6

59.867

98.687

0.591
  radA Streptococcus pneumoniae TIGR4

59.867

98.687

0.591
  radA Streptococcus mitis NCTC 12261

59.867

98.687

0.591
  radA Streptococcus mitis SK321

59.867

98.687

0.591