Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   KNN_RS06510 Genome accession   NZ_AP014864
Coordinates   1245101..1245847 (+) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1240101..1250847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNN_RS06480 (KNN_01335) - 1240390..1242534 (+) 2145 WP_000091510.1 HD family phosphohydrolase -
  KNN_RS06485 (KNN_01336) ybeY 1242531..1243001 (+) 471 WP_001050397.1 rRNA maturation RNase YbeY -
  KNN_RS06490 (KNN_01337) - 1242998..1243351 (+) 354 WP_000715464.1 diacylglycerol kinase family protein -
  KNN_RS06495 (KNN_01338) - 1243451..1243849 (+) 399 WP_001086283.1 cytidine deaminase -
  KNN_RS06500 (KNN_01339) era 1243842..1244747 (+) 906 WP_001080230.1 GTPase Era -
  KNN_RS06505 (KNN_01340) - 1244924..1245067 (+) 144 WP_000883924.1 YqzL family protein -
  KNN_RS06510 (KNN_01341) recO 1245101..1245847 (+) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  KNN_RS06515 (KNN_01342) - 1245955..1246587 (+) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  KNN_RS06520 (KNN_01343) - 1246617..1247429 (+) 813 WP_000368944.1 pyruvate, water dikinase regulatory protein -
  KNN_RS39030 - 1247797..1247928 (+) 132 WP_081097527.1 hypothetical protein -
  KNN_RS37035 (KNN_01344) - 1247990..1248208 (+) 219 WP_002164428.1 hypothetical protein -
  KNN_RS06525 (KNN_01345) dnaG 1248290..1250086 (+) 1797 WP_000528221.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=67173 KNN_RS06510 WP_000487009.1 1245101..1245847(+) (recO) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=67173 KNN_RS06510 WP_000487009.1 1245101..1245847(+) (recO) [Bacillus thuringiensis serovar tolworthi strain Pasteur Institute Standard strain]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAAATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTCAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment