Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA19_RS04035 Genome accession   NZ_CP094741
Coordinates   869991..870713 (-) Length   240 a.a.
NCBI ID   WP_037575675.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain IVB6200     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 864991..875713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA19_RS04015 (MUA19_03995) - 865940..866587 (+) 648 WP_037575663.1 redox-sensing transcriptional repressor Rex -
  MUA19_RS04020 (MUA19_04000) - 866761..867843 (+) 1083 WP_262617299.1 YeeE/YedE family protein -
  MUA19_RS04025 (MUA19_04005) - 867865..868089 (+) 225 WP_262617300.1 sulfurtransferase TusA family protein -
  MUA19_RS04030 (MUA19_04010) - 868452..869936 (+) 1485 WP_262617301.1 sucrose-6-phosphate hydrolase -
  MUA19_RS04035 (MUA19_04015) agrA 869991..870713 (-) 723 WP_037575675.1 quorum-sensing response regulator AgrA Regulator
  MUA19_RS04040 (MUA19_04020) agrC 870728..872026 (-) 1299 WP_105963426.1 quorum-sensing sensor histidine kinase AgrC -
  MUA19_RS04045 (MUA19_04025) agrD 872058..872192 (-) 135 WP_069191685.1 cyclic lactone autoinducer peptide AgrD -
  MUA19_RS04050 (MUA19_04030) - 872196..872759 (-) 564 WP_262617302.1 accessory gene regulator AgrB -
  MUA19_RS04055 (MUA19_04035) - 873407..874204 (-) 798 WP_105986647.1 carbon-nitrogen family hydrolase -
  MUA19_RS04060 - 874384..875562 (+) 1179 WP_262617303.1 SdrH family protein -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 28255.30 Da        Isoelectric Point: 5.2218

>NTDB_id=671719 MUA19_RS04035 WP_037575675.1 869991..870713(-) (agrA) [Staphylococcus chromogenes strain IVB6200]
MKILICEDDPKQRERMESIIRNYIMIEEKPMEIEISTSDPYALLEASKNMNDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKLAAMDFIFKDDVDELRTRVIDCLETALKRLDLLTKDNTVETMELKQGSNSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLRELAQIDDRFFRCHNSFVLNRHNITHVDAKDRIVYFKNDEFCYVSVRNIKKIKN

Nucleotide


Download         Length: 723 bp        

>NTDB_id=671719 MUA19_RS04035 WP_037575675.1 869991..870713(-) (agrA) [Staphylococcus chromogenes strain IVB6200]
TTGAAAATTTTAATTTGTGAAGATGATCCTAAACAAAGAGAACGAATGGAATCCATCATTCGAAATTATATTATGATTGA
AGAAAAACCTATGGAAATTGAAATTTCGACGAGTGATCCCTATGCTTTGCTCGAAGCTTCTAAAAACATGAATGATATCG
GTTGTTATTTTTTAGATATTCAACTGGAGTCTGATATTAATGGGATTAAGTTAGGAAGCGAAATTAGAAAACATGATCCT
GTTGGCAATATTATTTTCGTTACAAGTCATAGTGAATTAACCTATTTAACATTCGTATACAAATTGGCAGCCATGGATTT
TATTTTTAAAGATGATGTCGATGAGTTACGTACGCGAGTCATTGATTGTCTTGAAACAGCGTTAAAACGTCTTGATTTGC
TTACGAAAGATAATACGGTGGAAACAATGGAATTAAAACAAGGGAGCAATTCTGTTTATGTGAATTACGATGATGTCATG
TTTTTTGAATCCTCTCCAAAATCACATCGACTTATTGCACATTTAGATAATCGTCAAATTGAGTTTTACGGGAATTTAAG
AGAATTAGCACAAATCGATGATCGTTTTTTCCGTTGTCATAACAGTTTTGTCTTAAATCGCCACAATATCACGCATGTGG
ATGCAAAAGATCGAATTGTCTATTTTAAAAATGATGAGTTTTGCTATGTCTCTGTGAGAAACATTAAGAAAATCAAAAAT
TAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-239)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

81.933

99.167

0.813