Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OIE76_RS13870 Genome accession   NZ_CP109163
Coordinates   3058772..3060697 (+) Length   641 a.a.
NCBI ID   WP_327124807.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01727     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3053772..3065697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE76_RS13855 (OIE76_13885) - 3055057..3055362 (+) 306 WP_327129047.1 YtxH domain-containing protein -
  OIE76_RS13860 (OIE76_13890) - 3055423..3056868 (+) 1446 WP_327124805.1 FGGY family carbohydrate kinase -
  OIE76_RS13865 (OIE76_13895) rcrP 3057039..3058772 (+) 1734 WP_327124806.1 ABC transporter ATP-binding protein Regulator
  OIE76_RS13870 (OIE76_13900) rcrQ 3058772..3060697 (+) 1926 WP_327124807.1 ABC transporter ATP-binding protein Regulator
  OIE76_RS13875 (OIE76_13905) - 3060714..3061841 (-) 1128 WP_327124808.1 RNA polymerase sigma factor -
  OIE76_RS13880 (OIE76_13910) dnaG 3062066..3063970 (-) 1905 WP_327124809.1 DNA primase -
  OIE76_RS13885 (OIE76_13915) - 3064121..3065380 (-) 1260 WP_030925839.1 FAD/NAD(P)-binding oxidoreductase -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 69046.54 Da        Isoelectric Point: 5.4333

>NTDB_id=671710 OIE76_RS13870 WP_327124807.1 3058772..3060697(+) (rcrQ) [Streptomyces sp. NBC_01727]
MAGPGGRMMAGGAPTDRSMNFKGSSKRLLKRFATEKASLYGMLAACVLSVGLSVVGPKILGKATDLVFAGVIGRRMPAGT
TKEQAVEGLRKTNSALADLLSGVDFTPGQGIDFNAVGDILLTALAVYVGAGLLMLVATRLSIRIINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTVPLSVVVATKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQEESAKDFAEQNDALYEASFRAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQGPDPVTGERPADLLGSVSLEK
VSFRYEPDKPLIENLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVAKMSRDELRAGIGMVLQDTW
LFGGSIADNIAYGASREVSREEIEEAARAAHADRFIRTLPDGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHDELLDAQGAYARLYAAQFAQAVAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=671710 OIE76_RS13870 WP_327124807.1 3058772..3060697(+) (rcrQ) [Streptomyces sp. NBC_01727]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGGGCGCCGACCGACCGGTCCATGAACTTCAAGGGGTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGACGGAGAAGGCCTCGCTGTACGGGATGCTGGCGGCCTGCGTGCTGAGCGTCGGCCTCTCGG
TGGTGGGACCGAAGATCCTCGGCAAGGCGACCGACCTCGTGTTCGCCGGGGTCATCGGCCGGCGGATGCCCGCGGGCACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGACGAACAGCGCCTTGGCCGACCTGCTCTCCGGGGTCGACTTCACCCC
GGGCCAGGGCATCGACTTCAATGCGGTGGGCGACATACTGCTGACGGCGCTGGCGGTCTATGTCGGTGCCGGTCTGCTGA
TGCTGGTGGCCACCCGGCTGTCGATCCGGATCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTGCTGATCATGATGTTCT
GGATCTCGCCGCTGCTCGCCCTGGTCGCGCTGGTCACGGTGCCGCTGTCGGTGGTCGTGGCGACGAAGGTCGGCAAGCGG
TCGCAGCCGCAGTTCGTGCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGAGGAGTCCGCGAAGGACTTCGCCGAGCAGAACGACGCACTGTACGAGGCGAGCT
TCCGGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATAGCCGTC
GTCGGTGGGCTGCGGGTCGCATCGGGTGCGCTGTCGATCGGTGACGTCCAGGCGTTCATCCAGTACTCGCGGCAGTTCTC
GATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGTGTCGCCTCGGCCGAGCGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGGCCCCGATCCCGTGACGGGTGAGCGCCCGGCGGATCTGCTCGGCAGTGTCTCGCTGGAGAAG
GTGTCGTTCCGTTACGAGCCGGACAAGCCGCTCATCGAGAATCTGTCGCTGAGCGTCGAACCGGGCCACACGGTCGCGAT
CGTCGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
CGCTCGACGGCGTCGACGTGGCGAAGATGTCGCGCGACGAGCTGCGGGCGGGGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGTCGATCGCGGACAACATCGCGTACGGCGCTTCGCGCGAGGTCAGCCGGGAGGAGATCGAGGAGGCGGC
GAGGGCGGCTCACGCCGACCGCTTCATCCGTACCCTGCCGGACGGTTACGACACGGTGATCGACGACGAGGGCACCGGGG
TCAGCGCAGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCGGACCCCGTGATCCTGGTGCTCGACGAGGCG
ACGAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGGCGTACGAGCTTTGT
GATCGCGCACCGGCTCTCCACCATCCGGGACGCGGACGTCATCCTGGTGATGGAGAACGGGGCGATCGTCGAACAGGGCA
CGCACGACGAGCTGTTGGACGCGCAGGGGGCGTACGCCCGGCTGTATGCGGCGCAGTTCGCGCAGGCCGTCGCCGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(413-562)

ABC transporter transmembrane region (ABC_membrane)

(58-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.033

93.916

0.376