Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   MUA44_RS12300 Genome accession   NZ_CP094740
Coordinates   2577517..2578023 (-) Length   168 a.a.
NCBI ID   WP_019166018.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6190     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2572517..2583023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA44_RS12275 (MUA44_12255) - 2572621..2574612 (+) 1992 WP_262612937.1 catalase -
  MUA44_RS12280 (MUA44_12260) - 2574689..2575510 (-) 822 WP_262613660.1 MFS transporter -
  MUA44_RS12285 (MUA44_12265) - 2575548..2575922 (-) 375 WP_262616082.1 hypothetical protein -
  MUA44_RS12290 (MUA44_12270) - 2575967..2576848 (-) 882 WP_262616083.1 hypothetical protein -
  MUA44_RS12295 (MUA44_12275) rpsR 2577222..2577464 (-) 243 WP_014614919.1 30S ribosomal protein S18 -
  MUA44_RS12300 (MUA44_12280) ssbA 2577517..2578023 (-) 507 WP_019166018.1 single-stranded DNA-binding protein Machinery gene
  MUA44_RS12305 (MUA44_12285) rpsF 2578046..2578342 (-) 297 WP_014614921.1 30S ribosomal protein S6 -
  MUA44_RS12310 (MUA44_12290) - 2578683..2580224 (+) 1542 WP_262612940.1 B domain-containing protein -
  MUA44_RS12315 (MUA44_12295) - 2580278..2581087 (-) 810 WP_262612941.1 ABC transporter permease subunit -
  MUA44_RS12320 (MUA44_12300) - 2581080..2582015 (-) 936 WP_262612942.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18724.39 Da        Isoelectric Point: 5.1957

>NTDB_id=671710 MUA44_RS12300 WP_019166018.1 2577517..2578023(-) (ssbA) [Staphylococcus delphini strain IVB6190]
MLNRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQAENVNNFLFKGSLAGVDGRLQSR
SYENQEGRRVFVTEVVCDSVQFLEPKSQNQRHANQNQGNQFDSYGQGFGGQQQGQNSSYQNNNHQPANDNPFANANGPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=671710 MUA44_RS12300 WP_019166018.1 2577517..2578023(-) (ssbA) [Staphylococcus delphini strain IVB6190]
ATGCTTAATAGAGTCGTATTAGTAGGTCGCTTAACTAAAGATCCAGAATACAGAACGACACCCTCAGGCGTAAGTGTAGC
GACATTTACCTTAGCGGTTAATCGTACATTTACGAATGCGCAAGGGGAACGTGAAGCAGACTTCATTAACTGTGTTGTTT
TCCGTAAACAAGCAGAAAATGTAAACAATTTCTTGTTTAAAGGAAGTCTCGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTATTCGTCACTGAAGTGGTATGTGATAGTGTTCAATTCCTTGAGCCAAAATC
ACAAAACCAACGTCACGCGAACCAAAACCAAGGTAATCAATTCGATAGCTACGGTCAAGGATTCGGTGGACAACAACAAG
GCCAAAATTCGTCTTATCAAAACAATAATCATCAACCCGCTAACGATAACCCATTTGCGAATGCGAACGGTCCTATCGAT
ATTAGCGATGATGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.773

100

0.679
  ssb Latilactobacillus sakei subsp. sakei 23K

56.725

100

0.577
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.476

0.381
  ssb Glaesserella parasuis strain SC1401

34.27

100

0.363