Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OIE76_RS13865 Genome accession   NZ_CP109163
Coordinates   3057039..3058772 (+) Length   577 a.a.
NCBI ID   WP_327124806.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01727     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3052039..3063772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OIE76_RS13835 (OIE76_13865) - 3053484..3053684 (-) 201 WP_037822815.1 hypothetical protein -
  OIE76_RS13855 (OIE76_13885) - 3055057..3055362 (+) 306 WP_327129047.1 YtxH domain-containing protein -
  OIE76_RS13860 (OIE76_13890) - 3055423..3056868 (+) 1446 WP_327124805.1 FGGY family carbohydrate kinase -
  OIE76_RS13865 (OIE76_13895) rcrP 3057039..3058772 (+) 1734 WP_327124806.1 ABC transporter ATP-binding protein Regulator
  OIE76_RS13870 (OIE76_13900) rcrQ 3058772..3060697 (+) 1926 WP_327124807.1 ABC transporter ATP-binding protein Regulator
  OIE76_RS13875 (OIE76_13905) - 3060714..3061841 (-) 1128 WP_327124808.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62872.92 Da        Isoelectric Point: 5.3954

>NTDB_id=671709 OIE76_RS13865 WP_327124806.1 3057039..3058772(+) (rcrP) [Streptomyces sp. NBC_01727]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILQYGGIMIAVSIAQVVCNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLEPSLLARTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWRALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAEATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
QTYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671709 OIE76_RS13865 WP_327124806.1 3057039..3058772(+) (rcrP) [Streptomyces sp. NBC_01727]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTCCCCTCCCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACGGGCTACA
TCCTGCAGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCGTCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGCACTGCTGCCGCACTGGGCCGGGACGTCCGGGCGTCGGTCTTCGACCGCGTTCAGTCCTTCTCGGCACGTGAGGTCGG
GCGCTTCGGAGCGCCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACG
GGTACGAGGAGAAGCGATTCCGCGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTATGCGCAGAGCGCATCCAGGAGGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCGGTGCGGGAGCTGCGCGCTCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCACGCCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTGCCGCGGCTGTTCGACGTGACGGACGGTCAGGTGCTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGTCGCTGCTGGCGAGGACGGTGAGTCTGGTTCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCGCGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACGAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGAGGACGCTGGTGCAACGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACGCGACGGA
TGCCGCGCTGCGCCGAGCGCTGTCGCAGGAGACGGCCGAGGCGACCGTGGTGATAGTGGCGCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGGTCCGGCACCCATCACGAGCTGATGGACGGCAAT
CAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.271

100

0.412