Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA44_RS11485 Genome accession   NZ_CP094740
Coordinates   2396586..2397956 (-) Length   456 a.a.
NCBI ID   WP_262612883.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6190     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2391586..2402956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA44_RS11460 (MUA44_11440) cysE 2391752..2392417 (-) 666 WP_155262047.1 serine O-acetyltransferase -
  MUA44_RS11465 (MUA44_11445) gltX 2392804..2394258 (-) 1455 WP_096540452.1 glutamate--tRNA ligase -
  MUA44_RS11470 (MUA44_11450) ispF 2394335..2394814 (-) 480 WP_096540454.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA44_RS11475 (MUA44_11455) ispD 2394807..2395505 (-) 699 WP_262612882.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA44_RS11480 (MUA44_11460) - 2395506..2396567 (-) 1062 WP_019166688.1 PIN/TRAM domain-containing protein -
  MUA44_RS11485 (MUA44_11465) radA 2396586..2397956 (-) 1371 WP_262612883.1 DNA repair protein RadA Machinery gene
  MUA44_RS11490 (MUA44_11470) - 2398226..2400685 (-) 2460 WP_262612884.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA44_RS11495 (MUA44_11475) - 2400701..2401705 (-) 1005 WP_096593442.1 protein arginine kinase -
  MUA44_RS11500 (MUA44_11480) - 2401695..2402225 (-) 531 WP_014614778.1 UvrB/UvrC motif-containing protein -
  MUA44_RS11505 (MUA44_11485) - 2402240..2402701 (-) 462 WP_014614779.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49970.46 Da        Isoelectric Point: 7.1749

>NTDB_id=671707 MUA44_RS11485 WP_262612883.1 2396586..2397956(-) (radA) [Staphylococcus delphini strain IVB6190]
MAKTKTIFECTACGYQSPKWMGKCPNCGAWNSMEESFEQKTASPKHGVRAQKTSSAKIQKLNDIKQELAPRIQTNSGELN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSKEKRVLYITGEESLNQTKIRADRLDEDASQLNVFAETDLMVIHEA
VKKVEPDLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNVATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQSGLKSVLNPSEMFLEERTTNVAGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLSEPAVDLGIVIATASSFKDQAVDGLDCYVGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVIIPKNNIGGWQFPEGIEVIGVTSVNEALKYALKN

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=671707 MUA44_RS11485 WP_262612883.1 2396586..2397956(-) (radA) [Staphylococcus delphini strain IVB6190]
GTGGCAAAAACGAAAACGATTTTTGAATGTACGGCCTGTGGTTACCAATCGCCTAAATGGATGGGTAAATGTCCAAATTG
TGGTGCTTGGAATTCAATGGAGGAATCTTTTGAACAAAAAACTGCGAGTCCTAAACACGGTGTAAGGGCGCAAAAGACAA
GTTCGGCTAAAATACAAAAGCTTAATGACATTAAACAAGAGCTTGCGCCACGTATCCAAACGAATAGTGGTGAATTAAAC
CGTGTGCTCGGTGGCGGTATTGTAGAAGGGTCACTCGTGCTGATTGGTGGCGATCCAGGGATAGGGAAGTCGACACTATT
ACTGCAAATGTGTGCGGCGTTATCTAAAGAAAAAAGAGTACTCTATATTACTGGTGAGGAATCACTCAATCAAACTAAAA
TTAGAGCAGATCGTTTAGATGAAGATGCGAGTCAACTGAACGTATTTGCGGAAACGGACTTAATGGTCATTCATGAAGCG
GTGAAAAAGGTCGAGCCTGATTTGATCGTCGTGGACTCGATTCAAACGATTTATCATCCTGAAATTAGTTCGGCGCCGGG
CTCTGTGTCGCAAGTTCGTGAAAGTACGCAAAGCTTGATGCATATTGCCAAACAGATGAATGTTGCGACGTTTATTGTAG
GCCATGTGACGAAAGAAGGCCAAATTGCGGGACCACGTTTGCTGGAACATATGGTGGATACGGTGCTTTATTTTGAAGGT
GATGAACATCATGCGTATCGTATTTTAAGAGCGGTGAAAAATCGTTTTGGCTCTACGAATGAAATGGGCATTTTTGAAAT
GAAGCAGTCCGGTTTAAAAAGTGTGCTCAATCCGTCAGAAATGTTTTTAGAAGAACGGACGACTAATGTTGCAGGTTCGA
CAATTGTTGCAACGATGGAAGGCACACGACCATTATTGATTGAAGTACAAGCACTTGTGACACCGACGACGTTCAATAAC
CCGAGACGTATGGCGACAGGGATTGACCATAATCGTCTCAGTTTGTTGATGGCGGTGTTAGAGAAAAAAGAAGGGTATTT
ACTACAACAACAAGATGCTTACATTAAGGTGGCAGGTGGCGTCAAACTTTCTGAACCTGCTGTCGACTTAGGTATCGTCA
TTGCGACAGCTTCTAGTTTTAAAGACCAAGCAGTAGATGGCCTCGATTGTTATGTTGGCGAGGTTGGATTGACAGGTGAG
GTGCGCCGTGTTTCACGTATTGAGCAACGTGTGCAAGAAGCGGCAAAACTGGGCTTTAAACGCGTAATTATCCCTAAAAA
CAATATTGGCGGATGGCAGTTCCCAGAAGGTATTGAAGTGATTGGCGTGACTTCTGTCAATGAAGCATTGAAATACGCAT
TAAAAAATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)

AAA domain (AAA_25)

(71-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.57

100

0.656
  radA Streptococcus pneumoniae Rx1

58.85

99.123

0.583
  radA Streptococcus pneumoniae D39

58.85

99.123

0.583
  radA Streptococcus pneumoniae R6

58.85

99.123

0.583
  radA Streptococcus pneumoniae TIGR4

58.85

99.123

0.583
  radA Streptococcus mitis NCTC 12261

58.85

99.123

0.583
  radA Streptococcus mitis SK321

58.85

99.123

0.583