Detailed information    

insolico Bioinformatically predicted

Overview

Name   micB   Type   Regulator
Locus tag   OHA38_RS37180 Genome accession   NZ_CP109157
Coordinates   8326702..8327061 (+) Length   119 a.a.
NCBI ID   WP_266488452.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01732     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 8321702..8332061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA38_RS37145 (OHA38_37085) - 8322059..8322481 (+) 423 WP_124720391.1 cupin domain-containing protein -
  OHA38_RS37150 (OHA38_37090) - 8322606..8322743 (+) 138 WP_266622940.1 hypothetical protein -
  OHA38_RS37155 (OHA38_37095) - 8323107..8324270 (+) 1164 WP_124720390.1 epoxide hydrolase family protein -
  OHA38_RS37160 (OHA38_37100) - 8324370..8324768 (-) 399 WP_124720389.1 hypothetical protein -
  OHA38_RS37165 (OHA38_37105) - 8325038..8325574 (+) 537 WP_124720388.1 hypothetical protein -
  OHA38_RS37170 - 8325740..8326351 (+) 612 Protein_7342 hypothetical protein -
  OHA38_RS37175 - 8326447..8326524 (+) 78 Protein_7343 hypothetical protein -
  OHA38_RS37180 (OHA38_37115) micB 8326702..8327061 (+) 360 WP_266488452.1 cell wall metabolism sensor histidine kinase WalK Regulator
  OHA38_RS37185 (OHA38_37120) - 8327071..8327520 (+) 450 WP_124720387.1 NUDIX hydrolase -
  OHA38_RS37190 (OHA38_37130) - 8327681..8328067 (+) 387 WP_124720386.1 VOC family protein -
  OHA38_RS37195 (OHA38_37135) - 8328420..8328812 (+) 393 WP_124720385.1 SAV_915 family protein -
  OHA38_RS37200 (OHA38_37140) lysA 8328824..8330197 (+) 1374 WP_371801287.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 119 a.a.        Molecular weight: 12848.48 Da        Isoelectric Point: 9.4596

>NTDB_id=671688 OHA38_RS37180 WP_266488452.1 8326702..8327061(+) (micB) [Streptomyces sp. NBC_01732]
MSGDEDALARVVRNLLDNALRHAATRIDVSLRTLHGTARLVVADDGPGIPGADRERVFDRFTRLDDARARDTGGSGLGLA
IVRDIVTAHHGSTHIEDNRPGTRLIVVLPVEGRIARASR

Nucleotide


Download         Length: 360 bp        

>NTDB_id=671688 OHA38_RS37180 WP_266488452.1 8326702..8327061(+) (micB) [Streptomyces sp. NBC_01732]
GTGAGCGGGGACGAGGACGCCCTCGCCCGAGTTGTGCGCAACCTCCTGGACAACGCGCTGCGCCATGCCGCGACCCGCAT
CGACGTCAGCCTCCGTACCCTGCACGGCACCGCACGACTGGTCGTCGCCGACGACGGCCCCGGTATCCCCGGGGCGGACC
GGGAGCGCGTCTTCGACCGGTTCACCCGCCTGGACGACGCCCGCGCCCGGGACACCGGCGGCAGCGGGCTCGGCCTCGCC
ATCGTCCGCGACATCGTCACGGCCCACCACGGCAGCACCCACATCGAGGACAACCGGCCGGGCACCCGGCTGATCGTCGT
GCTGCCGGTCGAGGGGCGGATCGCGCGGGCGTCCCGGTAG

Domains

Predicted by InterProScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(3-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

37.719

95.798

0.361