Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OHA38_RS29525 Genome accession   NZ_CP109157
Coordinates   6510743..6511756 (+) Length   337 a.a.
NCBI ID   WP_266490351.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01732     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 6505743..6516756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA38_RS29505 (OHA38_29460) - 6505995..6507668 (+) 1674 WP_124716202.1 ABC transporter substrate-binding protein -
  OHA38_RS29510 (OHA38_29465) - 6507700..6508785 (+) 1086 WP_241196189.1 ABC transporter ATP-binding protein -
  OHA38_RS29515 (OHA38_29470) - 6508782..6509762 (+) 981 WP_124716201.1 ABC transporter permease -
  OHA38_RS29520 (OHA38_29475) - 6509766..6510746 (+) 981 WP_266791870.1 ABC transporter permease -
  OHA38_RS29525 (OHA38_29480) amiE 6510743..6511756 (+) 1014 WP_266490351.1 ABC transporter ATP-binding protein Regulator
  OHA38_RS29530 (OHA38_29485) - 6511784..6513208 (+) 1425 WP_124716198.1 GH1 family beta-glucosidase -
  OHA38_RS29535 (OHA38_29490) - 6513261..6514628 (+) 1368 WP_371801092.1 hypothetical protein -

Sequence

Protein


Download         Length: 337 a.a.        Molecular weight: 36302.76 Da        Isoelectric Point: 7.4320

>NTDB_id=671670 OHA38_RS29525 WP_266490351.1 6510743..6511756(+) (amiE) [Streptomyces sp. NBC_01732]
MSEPVLTVRGLNVDYGTGDDAVHALRDIDLTLHRGEVLGLAGESGSGKSTLAYAVTRLLSPPGVITGGEVHYHRRDGGTL
DLLALSAAGLRAFRWQELSIVFQGAMNSLNPVHTVHSQLTDVLRAHRPGMKRSERTARARELLALVGISADRLAAYPHQL
SGGMRQRVMIAMALALEPEIVIMDEPTTALDVVMQRQILSQLVRLREELGFSVVFITHDISLLIEFSDRIAIMYGGRIVE
EARAAAIYRDPHHPYSDGLLHSFPALHGARRELTGIPGSPPHLSAMPAGCAFHPRCGKALDACAGHVPVLAAPDGDASRT
VACWLHRPAPATAAPRP

Nucleotide


Download         Length: 1014 bp        

>NTDB_id=671670 OHA38_RS29525 WP_266490351.1 6510743..6511756(+) (amiE) [Streptomyces sp. NBC_01732]
ATGAGCGAGCCCGTCCTCACCGTCCGCGGGCTGAACGTGGACTACGGGACCGGGGACGACGCCGTGCACGCGCTGCGCGA
CATCGACCTCACCCTGCACCGGGGCGAAGTGCTGGGCCTGGCGGGCGAGTCCGGGTCCGGCAAGTCGACCCTCGCGTACG
CCGTCACCCGGCTGCTCTCACCGCCCGGGGTGATCACCGGCGGCGAGGTCCACTACCACCGGCGGGACGGCGGGACGCTC
GACCTGCTGGCCCTGTCGGCCGCCGGGCTGAGGGCCTTCCGCTGGCAGGAGCTGTCGATCGTGTTCCAGGGCGCGATGAA
CTCGCTCAACCCGGTGCACACGGTCCACAGCCAGCTCACCGACGTACTGCGGGCCCACCGCCCGGGAATGAAACGGTCCG
AACGGACCGCCCGGGCCCGGGAGCTGCTGGCGCTCGTCGGCATCTCCGCCGACCGGCTCGCCGCCTATCCGCACCAGCTC
TCCGGCGGGATGCGCCAGCGCGTGATGATCGCGATGGCGCTCGCGCTGGAGCCCGAGATCGTCATCATGGACGAACCCAC
GACGGCCCTGGACGTCGTCATGCAGCGCCAGATCCTGAGCCAACTGGTCAGGCTGCGCGAGGAGCTGGGCTTCTCGGTCG
TCTTCATCACCCATGACATCTCGCTGCTGATCGAGTTCTCGGACCGGATCGCGATCATGTACGGCGGCCGGATCGTCGAG
GAGGCGCGGGCCGCCGCGATCTACCGCGACCCCCACCACCCCTACAGCGACGGGCTGCTCCACTCCTTCCCCGCACTGCA
CGGCGCCCGCCGCGAACTGACCGGCATCCCCGGCTCGCCCCCGCACCTGTCCGCGATGCCGGCCGGCTGCGCCTTCCACC
CCCGCTGCGGCAAGGCGCTCGACGCCTGCGCCGGCCATGTCCCGGTGCTCGCCGCACCGGACGGGGACGCGTCGCGCACG
GTGGCCTGCTGGCTCCACCGGCCGGCCCCGGCGACCGCCGCACCCCGCCCGTAG

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-303)

ABC transporter (ABC_tran)

(25-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

39.403

99.407

0.392
  amiE Streptococcus thermophilus LMD-9

39.403

99.407

0.392
  amiE Streptococcus salivarius strain HSISS4

39.104

99.407

0.389
  oppD Streptococcus mutans UA159

38.11

97.329

0.371