Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA34_RS00370 Genome accession   NZ_CP094738
Coordinates   78642..79991 (-) Length   449 a.a.
NCBI ID   WP_262611009.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6220     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 75775..85997 78642..79991 within 0


Gene organization within MGE regions


Location: 75775..85997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA34_RS00355 (MUA34_00355) - 75775..76086 (-) 312 WP_031914242.1 DUF960 family protein -
  MUA34_RS00360 (MUA34_00360) - 76182..76520 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA34_RS00365 (MUA34_00365) ccrB 76992..78620 (-) 1629 Protein_71 cassette chromosome recombinase CcrB -
  MUA34_RS00370 (MUA34_00370) ccrA 78642..79991 (-) 1350 WP_262611009.1 cassette chromosome recombinase CcrA Machinery gene
  MUA34_RS00375 (MUA34_00375) cch1 80170..81954 (-) 1785 WP_262611011.1 cassette chromosome replicative helicase -
  MUA34_RS00380 (MUA34_00380) ssb 81954..82244 (-) 291 WP_107377044.1 cassette chromosome ssDNA-binding protein -
  MUA34_RS00385 (MUA34_00385) - 82386..83486 (+) 1101 WP_262611015.1 hypothetical protein -
  MUA34_RS00390 (MUA34_00390) - 83514..84188 (-) 675 WP_118003383.1 IS6 family transposase -
  MUA34_RS00395 (MUA34_00395) - 84510..85007 (+) 498 WP_262611017.1 hypothetical protein -
  MUA34_RS00400 (MUA34_00400) - 85033..85242 (+) 210 WP_262604232.1 hypothetical protein -
  MUA34_RS00405 (MUA34_00405) - 85797..85997 (+) 201 WP_262611019.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52268.25 Da        Isoelectric Point: 10.0277

>NTDB_id=671619 MUA34_RS00370 WP_262611009.1 78642..79991(-) (ccrA) [Staphylococcus delphini strain IVB6220]
MKQAIGYLRQSTTKQQSLTAQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKAIFHYYLQGYGYKKIAQYLEEDTKLINRKPYQVRAIIMNPNYCGRVINQYGQYDNMVPSIVSISI
YEQAQAIRAQKHTKRTPSSNQLKQKIKCPCCGSTLTNMTIRKKNHTLRYYVCPQNLNASRFICDFKGINAENLEKQVLES
CQKFFRDQQLYSKIKHAIEKQLKKQKMHNTNNTLTHEKLIEKLAQGTIDVETFREQSQSISLQHKPIQPISDIRIKASLQ
KVIQKSFTLKMLYPYIDEIHITKNKELSGIYLKDEPLNIVNQTIQSSTG

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=671619 MUA34_RS00370 WP_262611009.1 78642..79991(-) (ccrA) [Staphylococcus delphini strain IVB6220]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCGCACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACTGGCT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTAAAGGCAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACTTAGAAGAAGATACTAAGCTAATCAACCGAAAACCCTATCAAGTACGCGCTATTATCATGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGACAATATGGTTCCATCTATTGTTTCGATCAGTATA
TACGAACAAGCTCAAGCAATACGGGCACAAAAACATACCAAACGGACTCCATCATCTAATCAACTCAAACAAAAAATCAA
ATGTCCGTGTTGTGGCTCAACACTCACAAATATGACAATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTCCTC
AAAATTTGAATGCATCACGTTTCATATGTGACTTTAAAGGAATAAACGCTGAAAACCTAGAAAAACAGGTCTTAGAATCC
TGCCAAAAATTCTTTCGAGACCAACAGCTCTATTCGAAAATCAAACACGCTATTGAGAAACAGCTCAAAAAACAAAAAAT
GCATAATACTAATAACACATTAACTCATGAAAAGCTCATTGAAAAATTAGCACAAGGAACAATTGATGTAGAAACATTCA
GAGAACAATCTCAATCAATAAGCCTGCAGCATAAACCTATACAACCAATAAGTGATATTCGGATAAAAGCATCACTACAA
AAGGTTATACAGAAAAGTTTCACGTTAAAAATGCTGTATCCATATATTGATGAAATTCATATTACTAAAAATAAAGAACT
AAGCGGCATCTATTTAAAAGATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGGCTAA

Domains

Predicted by InterproScan.

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

77.181

99.555

0.768
  ccrA Staphylococcus aureus N315

71.938

100

0.719