Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   MUA33_RS00195 Genome accession   NZ_CP094736
Coordinates   41579..42928 (-) Length   449 a.a.
NCBI ID   WP_262630932.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6222     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 36579..47928
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA33_RS00165 (MUA33_00165) - 37548..37732 (-) 185 Protein_30 hypothetical protein -
  MUA33_RS00170 (MUA33_00170) - 37787..38290 (-) 504 WP_262630930.1 DUF1643 domain-containing protein -
  MUA33_RS00175 (MUA33_00175) - 38306..38617 (-) 312 WP_262630931.1 DUF960 domain-containing protein -
  MUA33_RS00180 (MUA33_00180) - 38713..39051 (-) 339 WP_031914243.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA33_RS00185 (MUA33_00185) - 39607..39894 (+) 288 WP_262604220.1 hypothetical protein -
  MUA33_RS00190 (MUA33_00190) ccrB 39929..41557 (-) 1629 Protein_35 cassette chromosome recombinase CcrB -
  MUA33_RS00195 (MUA33_00195) ccrA 41579..42928 (-) 1350 WP_262630932.1 cassette chromosome recombinase CcrA Machinery gene
  MUA33_RS00200 (MUA33_00200) cch1 43107..44891 (-) 1785 WP_262630933.1 cassette chromosome replicative helicase -
  MUA33_RS00205 (MUA33_00205) - 45017..46444 (-) 1428 WP_262630934.1 DUF6038 family protein -
  MUA33_RS00210 (MUA33_00210) - 46661..47635 (+) 975 WP_262630935.1 ATP-binding protein -
  MUA33_RS00215 (MUA33_00215) - 47614..47829 (+) 216 WP_262630936.1 hypothetical protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52399.00 Da        Isoelectric Point: 10.0006

>NTDB_id=671586 MUA33_RS00195 WP_262630932.1 41579..42928(-) (ccrA) [Staphylococcus delphini strain IVB6222]
MKQAIGYLRQSTTKQQSLTTQKQTIETLAKKYNIQHIIFYSDKQSGRTDNRTGYQQVIESIQQRQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSIHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVKNGLKEKARQGKLITTHAPFGYTYR
NGTFTINQDEAPTVKTIFHYYLQGYGYKKIAQYLETDDKCINRKPYQVRAIITNPNYCGRVINQYGQYDNMFPSIVSTNI
YEQAQEIRSQKHTKRTPSDNQLQKKIKCPYCGSTLTNMTIRKKHHTLRYYVCPKNMNASRFVCAFKGINAQVLETSVLAT
CQNFFQNQQLYSKINQTIQQRFKRQRDIEAKHTLTQEQLVDKLAKGMIDAETFRNQSQSVLQKRKTISSISDTQLQTSLQ
KVIQKSFTLNMLYPYIDEIHITKNKELSGIYIKNEPLNIVNQTIQSSTD

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=671586 MUA33_RS00195 WP_262630932.1 41579..42928(-) (ccrA) [Staphylococcus delphini strain IVB6222]
ATGAAACAAGCTATTGGTTATTTACGCCAAAGTACAACCAAGCAACAATCACTCACCACACAGAAACAAACTATCGAAAC
GCTCGCTAAAAAATACAATATCCAACACATCATCTTTTATAGTGATAAGCAATCAGGCAGAACGGATAATCGAACTGGTT
ATCAACAAGTCATCGAAAGCATTCAACAAAGACAATGTGACGTATTATGTTGTTATCGCTTGAATCGACTGCATCGTAAT
TTGAAAAATGCATTAAAACTTATGAAACTGTGTCAAAAGTATCATGTTCATATTCTAAGTATTCATGATGGCTATTTTGA
TATGGATAAAGCGTTTGATCGCCTAAAACTTAATATATTCATAAGTCTCGCAGAATTAGAGTCCGATAATATTGGTGAAC
AAGTCAAGAATGGTCTTAAAGAAAAAGCTAGACAAGGTAAACTCATCACGACACATGCACCATTTGGTTATACCTATCGC
AATGGCACATTCACAATTAATCAAGATGAAGCACCAACGGTTAAGACAATATTCCATTACTACCTACAAGGCTATGGTTA
TAAGAAAATTGCGCAATACCTAGAAACAGATGATAAATGTATTAATCGTAAGCCCTACCAAGTACGCGCTATTATCACGA
ATCCTAATTATTGTGGTCGCGTTATCAATCAATATGGACAATATGATAACATGTTCCCATCTATTGTTTCGACCAATATA
TACGAACAAGCTCAAGAAATACGGTCACAAAAACATACAAAACGGACTCCCTCAGATAATCAACTTCAGAAGAAAATAAA
ATGTCCATATTGTGGATCAACCCTGACTAATATGACGATTAGAAAAAAGCACCATACCTTACGTTATTATGTCTGTCCTA
AAAACATGAATGCATCACGTTTTGTCTGTGCATTCAAAGGAATCAATGCGCAAGTATTAGAAACAAGTGTCTTAGCGACT
TGTCAGAACTTCTTTCAGAACCAACAGCTCTATTCAAAAATCAACCAAACAATTCAACAACGATTCAAAAGACAAAGGGA
CATAGAAGCTAAACATACACTCACGCAAGAACAACTGGTAGATAAACTTGCCAAAGGTATGATTGATGCTGAAACATTCA
GGAATCAGTCTCAATCAGTGCTTCAAAAGCGCAAAACCATATCTTCAATAAGTGATACTCAGTTACAAACATCACTACAA
AAGGTTATACAGAAAAGTTTTACGTTAAACATGTTATATCCCTATATTGATGAAATTCATATTACTAAAAATAAAGAATT
AAGCGGAATCTATATAAAAAATGAGCCACTAAACATCGTTAATCAAACGATACAATCATCAACTGACTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-322)

Resolvase, N terminal domain (Resolvase)

(4-147)

Recombinase (Recombinase)

(169-250)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

80.984

99.555

0.806
  ccrA Staphylococcus aureus N315

73.602

99.555

0.733