Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   OG966_RS20280 Genome accession   NZ_CP109137
Coordinates   4512366..4513499 (+) Length   377 a.a.
NCBI ID   WP_326651152.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4507366..4518499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS20265 (OG966_20295) dnaA 4507554..4509353 (+) 1800 WP_326651149.1 chromosomal replication initiator protein DnaA -
  OG966_RS20270 (OG966_20300) dnaN 4510192..4511322 (+) 1131 WP_326651150.1 DNA polymerase III subunit beta -
  OG966_RS20275 (OG966_20305) gnd 4511460..4512335 (+) 876 WP_326651151.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG966_RS20280 (OG966_20310) recF 4512366..4513499 (+) 1134 WP_326651152.1 DNA replication/repair protein RecF Machinery gene
  OG966_RS20285 (OG966_20315) - 4513496..4514050 (+) 555 WP_326651153.1 DciA family protein -
  OG966_RS20290 (OG966_20320) gyrB 4514848..4516914 (+) 2067 WP_326651154.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 377 a.a.        Molecular weight: 40761.46 Da        Isoelectric Point: 6.9260

>NTDB_id=671571 OG966_RS20280 WP_326651152.1 4512366..4513499(+) (recF) [Streptomyces sp. NBC_01750]
MHVTHLSLADFRSYARVEVPLDPGVTAFVGPNGQGKTNLVEAVGYLATLASHRVSSDAPLVRMGADRAVIRAAVTQGERS
QLIELELNPGKANRARINRSSQVRPRDVLGIVRTVLFAPEDLSLVKGDPGERRRFLDELVTARSPRMAGVRSDYERVLKQ
RNTLLKSAAMARRHGGRGMDLSTLDVWDQHLARVGAELLAQRIDLIAAMQPLADKAYEALAPGGGPVALEYRSSSSAGGG
VCAHGRDELYAQLIGALAEVRKQEIERGVTLVGPHRDELVLKLGPLPAKGYASHGESWSYALALRLASYELLRAEGNEPV
LVLDDVFAELDTRRRERLAELVAPGEQVLVTAAVDDDVPGVLAGARFTVADGEVERV

Nucleotide


Download         Length: 1134 bp        

>NTDB_id=671571 OG966_RS20280 WP_326651152.1 4512366..4513499(+) (recF) [Streptomyces sp. NBC_01750]
ATGCACGTCACGCATTTGTCGCTGGCCGACTTCCGCTCGTACGCCCGGGTCGAGGTCCCACTCGACCCGGGCGTCACCGC
GTTCGTGGGGCCGAACGGGCAGGGCAAGACGAATCTCGTCGAGGCGGTCGGCTATCTCGCGACGCTGGCCAGCCATCGGG
TCTCGTCGGACGCTCCTCTGGTACGGATGGGGGCCGACCGCGCCGTCATCCGGGCCGCCGTCACACAGGGCGAGCGTTCC
CAGCTGATCGAGCTGGAGCTCAACCCAGGGAAGGCGAACCGAGCCCGTATCAACAGGTCTTCACAGGTCAGACCTCGTGA
TGTGCTGGGGATAGTACGGACGGTGCTGTTCGCGCCGGAGGATCTGTCTTTGGTGAAGGGCGATCCGGGCGAGCGGCGAC
GGTTCCTCGACGAGCTGGTCACGGCGCGGTCGCCGCGGATGGCCGGGGTGCGGTCCGACTACGAGCGGGTGCTCAAGCAG
CGCAACACGCTGCTGAAGTCGGCAGCGATGGCGCGACGGCACGGCGGACGCGGGATGGATCTGTCCACGCTGGATGTGTG
GGACCAGCATCTGGCGCGGGTGGGGGCGGAGCTGCTGGCACAGCGGATCGATCTGATCGCCGCGATGCAGCCGCTGGCGG
ACAAGGCGTACGAGGCGCTGGCACCGGGGGGCGGGCCGGTTGCGCTGGAGTACCGTTCCTCCTCTTCTGCCGGCGGCGGG
GTCTGTGCGCACGGTCGCGACGAGCTGTACGCACAGTTGATCGGCGCGCTTGCGGAGGTGCGCAAGCAGGAGATCGAGCG
GGGTGTGACGCTGGTCGGTCCGCACCGCGATGAGCTGGTGCTCAAGCTGGGGCCGCTGCCGGCGAAGGGGTACGCCAGTC
ATGGCGAGTCCTGGTCCTACGCGCTGGCGCTGCGGCTGGCTTCGTACGAGCTGCTGCGGGCCGAAGGCAATGAGCCGGTG
CTCGTCCTGGATGACGTTTTCGCGGAGCTGGACACGCGGCGTCGGGAGCGGCTCGCGGAACTGGTGGCTCCGGGTGAGCA
GGTGCTGGTGACGGCGGCGGTCGACGACGATGTGCCGGGGGTGCTGGCCGGGGCGCGGTTCACGGTGGCCGACGGGGAGG
TGGAGCGCGTATGA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-352)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

36.434

100

0.374