Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA22_RS04190 Genome accession   NZ_CP094734
Coordinates   931540..932256 (-) Length   238 a.a.
NCBI ID   WP_019166403.1    Uniprot ID   -
Organism   Staphylococcus delphini strain IVB6245     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 926540..937256
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA22_RS04170 (MUA22_04170) - 926726..927811 (-) 1086 WP_262613400.1 YeeE/YedE family protein -
  MUA22_RS04175 (MUA22_04175) - 928045..928992 (+) 948 WP_262613401.1 LacI family DNA-binding transcriptional regulator -
  MUA22_RS04180 (MUA22_04180) - 929048..930535 (+) 1488 WP_262613402.1 sucrose-6-phosphate hydrolase -
  MUA22_RS04185 (MUA22_04185) - 930536..931480 (+) 945 WP_262613403.1 carbohydrate kinase -
  MUA22_RS04190 (MUA22_04190) agrA 931540..932256 (-) 717 WP_019166403.1 quorum-sensing response regulator AgrA Regulator
  MUA22_RS04195 (MUA22_04195) agrC 932270..933562 (-) 1293 WP_394356344.1 quorum-sensing sensor histidine kinase AgrC -
  MUA22_RS04200 (MUA22_04200) agrD 933585..933722 (-) 138 WP_020219911.1 cyclic lactone autoinducer peptide AgrD -
  MUA22_RS04205 (MUA22_04205) - 933724..934290 (-) 567 WP_096542351.1 accessory gene regulator AgrB -
  MUA22_RS12870 - 934682..934762 (+) 81 WP_224397836.1 delta-lysin family phenol-soluble modulin -
  MUA22_RS04210 (MUA22_04210) - 935045..935848 (-) 804 WP_262613407.1 carbon-nitrogen family hydrolase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28072.20 Da        Isoelectric Point: 5.2431

>NTDB_id=671557 MUA22_RS04190 WP_019166403.1 931540..932256(-) (agrA) [Staphylococcus delphini strain IVB6245]
MKILICEDDPKQRERMVSIIENYIMIEEKPMEIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDDVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITRVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=671557 MUA22_RS04190 WP_019166403.1 931540..932256(-) (agrA) [Staphylococcus delphini strain IVB6245]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGCATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGGAAATTGAGCTTGCTACCAATGACCCTTACGCTATTTTAGAAACTTCTAAAAACATGACTGATATTG
GTTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATCCGTAAACACGATCCT
GTCGGAAATATTATTTTTGTGACAAGTCATAGTGAACTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGACGATCCTGAAGAATTAAGAACACGCATTATCGATTGTTTAGAAACTGCGTTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGGACGAGCTCGGTTTACGTGAACTATGATGACGTGATG
TTTTTCGAGTCCTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAGTTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGACCGGTTCTTCAGATGTCACAACAGTTATGTGCTGAATAGAAGGAATATAACGCGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTCTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

83.193

100

0.832