Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG966_RS13140 Genome accession   NZ_CP109137
Coordinates   2903866..2905788 (+) Length   640 a.a.
NCBI ID   WP_326649768.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2898866..2910788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS13125 (OG966_13155) - 2900263..2900562 (+) 300 WP_326649765.1 YtxH domain-containing protein -
  OG966_RS13130 (OG966_13160) - 2900599..2902044 (+) 1446 WP_326649766.1 FGGY family carbohydrate kinase -
  OG966_RS13135 (OG966_13165) rcrP 2902136..2903869 (+) 1734 WP_326649767.1 ABC transporter ATP-binding protein Regulator
  OG966_RS13140 (OG966_13170) rcrQ 2903866..2905788 (+) 1923 WP_326649768.1 ABC transporter ATP-binding protein Regulator
  OG966_RS13145 (OG966_13175) - 2905810..2907059 (-) 1250 Protein_2607 RNA polymerase sigma factor -
  OG966_RS13150 (OG966_13180) dnaG 2907165..2909069 (-) 1905 WP_326649769.1 DNA primase -
  OG966_RS13155 (OG966_13185) - 2909104..2910366 (-) 1263 WP_326649770.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69128.49 Da        Isoelectric Point: 5.4339

>NTDB_id=671557 OG966_RS13140 WP_326649768.1 2903866..2905788(+) (rcrQ) [Streptomyces sp. NBC_01750]
MSGPGGRMMMGPTERSMDFKGSGKRLLRQLAPERATLWTMLGAGVLSVALAVVGPKILGQATDLVFAGVVGRGMPAGTSK
DQAIEGLRDKGDGGLADMLSGVDFTPGNGIDFDAVANVLLVALAVYVAAGLLMLVSTRLSIRVINRTMYRMREDVQAKLS
RLPLSYFDRAKRGEVLSRATNDMDNISQTMQQTMGQLINSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVATRVGKRS
QPQFVQQWKSTGKLNAHIEEMYTGHALVKIFGRQDESAQAFAEQNETLYEAGFKAQFNSGVMQPLMFFVSNLNYVLVAVV
GGLRVATGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAQEQQPDSPSAERPKQLRGQVSLEKV
AFRYEPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRISLDGVDVAKMSREELRSGIGMVLQDTWL
FGGTIAENIAYGSSREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGAIVEQGTHDGLLAANGAYARLYAAQFAQAVVEVE

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=671557 OG966_RS13140 WP_326649768.1 2903866..2905788(+) (rcrQ) [Streptomyces sp. NBC_01750]
ATGAGCGGGCCGGGCGGACGCATGATGATGGGCCCCACCGAGCGGTCCATGGACTTCAAGGGCTCGGGCAAGCGGCTGCT
GCGGCAGCTCGCGCCGGAGCGGGCCACGCTGTGGACGATGCTCGGCGCGGGTGTGCTGAGCGTGGCGTTGGCGGTGGTCG
GGCCGAAGATTCTGGGGCAGGCGACGGACCTGGTCTTCGCGGGGGTCGTCGGCCGCGGCATGCCGGCCGGGACCAGCAAG
GACCAGGCGATCGAGGGCCTGCGGGACAAGGGCGACGGCGGGCTGGCCGACATGCTGTCCGGGGTGGACTTCACGCCCGG
CAACGGCATCGACTTCGACGCCGTAGCCAATGTGCTGCTGGTCGCGCTGGCCGTGTACGTGGCCGCCGGGCTGCTGATGC
TGGTGTCGACGAGGCTGTCGATCCGGGTGATCAACCGGACCATGTACCGGATGCGCGAGGACGTACAAGCGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGCGAGGTGCTCAGCCGGGCGACGAACGACATGGACAACATCTC
GCAGACCATGCAGCAGACCATGGGACAGCTGATCAACTCACTGCTGACCATCGTGGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCTCTGCTGGCGCTGGTCGCACTGGTGACGGTGCCGGTGTCGGTCTTTGTGGCGACGAGGGTCGGCAAGCGTTCG
CAGCCGCAGTTCGTGCAGCAGTGGAAGTCCACGGGCAAGCTCAACGCCCATATCGAGGAGATGTACACGGGCCACGCCCT
GGTGAAGATCTTCGGACGGCAGGACGAGTCGGCGCAGGCCTTCGCCGAGCAGAACGAGACGCTGTACGAGGCCGGTTTCA
AGGCCCAGTTCAACAGCGGCGTCATGCAGCCGCTGATGTTCTTCGTCTCCAACCTCAACTACGTGCTGGTGGCGGTCGTC
GGCGGCCTGCGGGTCGCGACCGGCACACTGTCGATCGGCGATGTGCAGGCGTTCATACAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACCCAAGTCGCGTCGATGGCGAACCTGGTGCAGTCGGGCGTCGCCTCGGCCGAGCGGATCTTCGAGCTGCTGG
ACGCGCAGGAGCAGCAGCCGGACTCCCCATCGGCCGAGCGGCCGAAGCAGCTGCGCGGTCAGGTGTCTTTGGAGAAGGTG
GCCTTCCGGTACGAGCCGGAGAAGCCTCTCATCGAGGATCTGTCGCTGAGCGTCGAACCCGGTCACACGGTCGCGATCGT
CGGGCCGACCGGCGCGGGCAAGACCACGCTGGTGAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCAGCC
TGGACGGCGTGGACGTCGCGAAGATGTCGCGTGAGGAACTGCGGTCCGGGATAGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACCATCGCGGAGAACATCGCCTACGGATCCTCCCGCGAGGTGACCCGGGAGGAGATCGAGGAGGCGGCGCG
GGCCGCCCACGCGGACCGGTTCGTACGGACCCTGCCCGACGGCTACGACACGGTGATCGACGACGAGGGCTCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTCTCCGACCCGGTGATCCTGGTGCTGGACGAGGCGACC
AGTTCGGTCGACACCCGCACCGAGGTACTGATCCAGAAGGCGATGGCGCGCCTGGCCCACGGCCGTACGAGCTTTGTCAT
CGCACACCGGCTCTCCACCATCCGGGACGCGGATGTGATCCTGGTGATGGAGAACGGCGCGATCGTCGAACAGGGTACGC
ACGACGGGCTGTTGGCGGCGAACGGCGCGTATGCGCGGCTGTACGCGGCCCAGTTCGCGCAGGCGGTCGTGGAGGTGGAG
TAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(412-561)

ABC transporter transmembrane region (ABC_membrane)

(55-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.546

96.406

0.381