Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG966_RS13135 Genome accession   NZ_CP109137
Coordinates   2902136..2903869 (+) Length   577 a.a.
NCBI ID   WP_326649767.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2897136..2908869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS13100 (OG966_13130) - 2897339..2897932 (-) 594 WP_326649764.1 MBL fold metallo-hydrolase -
  OG966_RS13105 (OG966_13135) - 2898073..2898981 (+) 909 WP_326655178.1 helix-turn-helix domain-containing protein -
  OG966_RS13125 (OG966_13155) - 2900263..2900562 (+) 300 WP_326649765.1 YtxH domain-containing protein -
  OG966_RS13130 (OG966_13160) - 2900599..2902044 (+) 1446 WP_326649766.1 FGGY family carbohydrate kinase -
  OG966_RS13135 (OG966_13165) rcrP 2902136..2903869 (+) 1734 WP_326649767.1 ABC transporter ATP-binding protein Regulator
  OG966_RS13140 (OG966_13170) rcrQ 2903866..2905788 (+) 1923 WP_326649768.1 ABC transporter ATP-binding protein Regulator
  OG966_RS13145 (OG966_13175) - 2905810..2907059 (-) 1250 Protein_2607 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62810.01 Da        Isoelectric Point: 5.4193

>NTDB_id=671556 OG966_RS13135 WP_326649767.1 2902136..2903869(+) (rcrP) [Streptomyces sp. NBC_01750]
MLIRLLRTHLRPYKKPIALLVALQLLQTSATLYLPTLNADIIDDGVVKGDTGYILEIGALMIAISLVQVFCNIGAVFYGA
RTAAALGRDVRADVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDEYEKERFREANTELTNVSLSTGRLMAL
MFPTVMTVVNVSSIVVVWFGAHRIDSGAIQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLGTDSSVVP
PAEPVRQLRRRGHLELRGAEFRYPGAEEPVLRSVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
ELDPALMARTVGLVPQKPYLFSGTVATNLRYGKPAASDEELWQALEVAQAADFVRELEGGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIFLFDDSFSALDYATDAALRRALASETAESTVVIVAQRVSTIRDADRIVVLDEGQVVGTGSHHELMESN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671556 OG966_RS13135 WP_326649767.1 2902136..2903869(+) (rcrP) [Streptomyces sp. NBC_01750]
GTGCTGATACGACTACTGCGGACGCACTTGCGTCCGTACAAGAAACCCATCGCCCTGCTCGTGGCTCTCCAGCTGCTGCA
GACCAGCGCCACCCTCTATCTGCCCACCCTGAACGCGGACATCATCGACGACGGTGTCGTGAAGGGGGACACGGGTTACA
TCCTGGAAATCGGCGCGCTCATGATCGCCATCAGCCTCGTCCAGGTCTTCTGCAATATCGGAGCCGTCTTCTACGGCGCC
AGGACCGCGGCCGCGCTCGGGCGGGATGTCCGGGCGGACGTCTTCGACCGGGTGCAGAGCTTCTCAGCGCGGGAAGTCGG
GCACTTCGGTGCGCCGTCGCTGATCACGCGTACGACCAATGACGTCCAACAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGCCAGGATGTGCCGCTGTCGGCGGTG
CTGCTGGCCGTGGTGCCTGTGCTGGGCATCGCGGTGTCGCTGATAGTCAAGAAGATGCGTCCGCTGTTCCGCACCATGCA
GGAGCGTCTGGACACCGTGAACCGGGTGCTGCGGGAGCAGATCACCGGCAACCGCGTCATTCGCGCCTTCGTACGGGACG
AGTACGAGAAGGAACGCTTCCGCGAGGCCAACACCGAGCTCACGAACGTGTCGCTGTCCACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACCGTCATGACGGTGGTGAATGTGTCGTCCATCGTCGTCGTCTGGTTCGGTGCTCACCGGATCGACAGCGG
TGCGATACAGATCGGCGCGCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGAGGATCGAGGAGGTCCTGGGCACGGATTCGAGTGTGGTGCCG
CCGGCCGAGCCGGTACGGCAGCTGCGCAGACGCGGACATCTGGAGCTGCGGGGCGCCGAGTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTGCGGAGCGTCGAACTGGTGGCGCGGCCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGTGGCA
AGTCGACCCTGCTGGGTCTCGTACCGCGGCTGTTCGATGTGACGGGCGGCGAGGTTCTCGTCGACGGCGTGGATGTGCGC
GAGCTCGATCCGGCGCTGATGGCCAGGACGGTGGGGCTCGTGCCCCAGAAGCCGTATCTCTTCTCCGGGACCGTGGCCAC
CAATCTGCGCTACGGGAAGCCCGCCGCCAGTGACGAAGAGCTGTGGCAGGCGCTCGAAGTGGCGCAGGCCGCGGACTTCG
TACGGGAGCTGGAAGGCGGGCTGAACGCGCCGATCGCCCAGGGTGGGACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCCAGGACACTGGTGCAGCGGCCCGAGATTTTCCTCTTCGACGACTCCTTCTCCGCGCTGGACTACGCCACGGA
CGCTGCGCTGCGCCGGGCACTGGCGAGCGAGACCGCGGAGTCGACCGTGGTGATCGTCGCCCAGCGAGTGTCCACCATCC
GTGACGCCGACCGGATCGTGGTGCTGGACGAGGGGCAGGTCGTGGGGACGGGAAGCCACCACGAGCTCATGGAGAGCAAC
GAGACCTACCGCGAGATCGTGCTCTCGCAGCTGACGGAGGCTGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.273

95.321

0.393