Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OG966_RS01680 Genome accession   NZ_CP109137
Coordinates   385481..387544 (-) Length   687 a.a.
NCBI ID   WP_326647504.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01750     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 380481..392544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG966_RS01665 (OG966_01670) - 382012..382755 (-) 744 WP_326647501.1 beta-phosphoglucomutase family hydrolase -
  OG966_RS01670 (OG966_01675) zwf 382912..384369 (-) 1458 WP_326647502.1 glucose-6-phosphate dehydrogenase -
  OG966_RS01675 (OG966_01680) gnd 384373..385386 (-) 1014 WP_326655043.1 decarboxylating 6-phosphogluconate dehydrogenase -
  OG966_RS01680 (OG966_01685) recP/tkt 385481..387544 (-) 2064 WP_326647504.1 transketolase Machinery gene
  OG966_RS01685 (OG966_01690) - 387703..388587 (-) 885 WP_326647506.1 universal stress protein -
  OG966_RS01690 (OG966_01695) - 388794..388960 (-) 167 Protein_336 IS481 family transposase -
  OG966_RS01695 (OG966_01700) - 389072..389308 (-) 237 WP_326647507.1 hypothetical protein -
  OG966_RS01700 (OG966_01705) - 389884..390414 (+) 531 WP_326647508.1 hypothetical protein -

Sequence

Protein


Download         Length: 687 a.a.        Molecular weight: 74887.57 Da        Isoelectric Point: 5.3069

>NTDB_id=671540 OG966_RS01680 WP_326647504.1 385481..387544(-) (recP/tkt) [Streptomyces sp. NBC_01750]
MTDLDTLSVNTVRGLCMDAVQKAQSGHPGTPMGIAPVAYTLWQRFLRFDPQDPIWPNRDRFVLSEGHASMLLWSLLHLTG
VRAVDPDYEVLGRPAVTLDDLKSFRQLGSRCPGHPEYRWTSGVEATTGPLGQGVADSVGMAMAGRWLAARYNREDFPLFD
FDVYALAGDGCMMEGVASEAASLAGHQRLSNLCWIYDSNRVTIEGHTSLTFTEDVAARFLAYGWNVTTVADANDLDAVAR
GFHTFRAETERPTLVLVHSHIGYGSPVEDSPKAHGAPFGPDGVRATKRFLGLPEDEQFWIPEEVRDWFGQGIGARGAQLR
TAWEKRFDAYRDAWPELADELERMQRRELPAGWDSKLPDFPADPKGLATRDSSAQVLNSLAQTVPWLFGGSADLAPSTKT
RLTFDGAGDFQPESPSGRNLHLGIREHAAAAVANGMALTKLRPYWSGFLIFSDYAKAAIRLSALMEIPVVHIFTHDSIGV
GEDGPTHQPVEQLAGLRAMPGLLVFRPGDAGEVVETWRLVAGLRHEPAALVLSRQALPTLDRTRLAAASGVARGAYVLAD
PPSGEPQVILLATGSEVSLALAARDELAADGIGARVVSMPCWELFDRQPREYRDQVLPPAVTARVGIEQASTFGWDRYVG
DGGAVVGMHTYGASAPLRQLLTKFGFTPQRVAEVARELVESRQEATT

Nucleotide


Download         Length: 2064 bp        

>NTDB_id=671540 OG966_RS01680 WP_326647504.1 385481..387544(-) (recP/tkt) [Streptomyces sp. NBC_01750]
ATGACCGACCTGGACACGCTGTCGGTGAACACCGTCCGCGGTCTCTGCATGGATGCCGTCCAGAAGGCCCAGTCCGGCCA
CCCGGGCACGCCCATGGGGATCGCGCCCGTCGCCTACACCCTCTGGCAGCGGTTCCTGCGGTTCGATCCCCAGGACCCGA
TCTGGCCCAACCGCGACCGCTTCGTGCTCTCCGAAGGGCACGCCTCGATGCTGCTGTGGTCCCTGCTCCATCTGACCGGC
GTCCGTGCCGTCGACCCGGACTACGAGGTGCTGGGACGGCCGGCGGTGACGCTCGACGACCTGAAGTCGTTCCGTCAGCT
CGGCTCCCGCTGCCCCGGTCACCCCGAGTACCGCTGGACGAGCGGTGTCGAGGCCACGACCGGGCCGCTCGGCCAGGGGG
TGGCCGACTCCGTCGGGATGGCGATGGCCGGCAGGTGGCTCGCCGCGCGGTACAACCGGGAGGACTTCCCCCTCTTCGAC
TTCGACGTGTACGCGCTCGCCGGGGACGGCTGCATGATGGAGGGCGTCGCCTCGGAGGCCGCCTCGCTCGCAGGGCATCA
ACGGCTGTCCAACCTGTGCTGGATCTACGACTCGAACCGGGTCACCATCGAGGGCCACACCAGCCTCACCTTCACCGAGG
ACGTCGCCGCCCGGTTCCTCGCGTACGGCTGGAACGTGACCACCGTCGCCGACGCCAACGACCTCGACGCCGTCGCCCGC
GGCTTCCACACCTTCCGGGCCGAGACCGAGCGCCCCACCCTGGTCCTGGTGCACAGCCACATCGGCTACGGCTCACCCGT
CGAGGACTCACCGAAGGCCCACGGAGCACCGTTCGGACCGGACGGCGTCCGGGCGACCAAGCGCTTCCTGGGCCTGCCCG
AGGACGAGCAGTTCTGGATTCCCGAAGAGGTACGTGACTGGTTCGGCCAGGGCATCGGTGCGCGCGGTGCACAACTGCGC
ACCGCCTGGGAGAAACGGTTCGACGCCTACCGCGACGCCTGGCCCGAACTCGCCGACGAGCTGGAGCGCATGCAGCGCCG
TGAACTCCCGGCCGGATGGGACAGCAAGCTTCCCGACTTCCCCGCCGACCCCAAGGGCCTGGCCACCAGGGACTCCTCGG
CCCAGGTGCTCAACTCCCTCGCGCAGACCGTTCCCTGGCTCTTCGGCGGCTCCGCCGACCTCGCGCCGTCGACCAAGACC
CGTCTCACCTTCGACGGCGCGGGAGACTTCCAGCCGGAGAGCCCGTCCGGGCGCAACCTCCACCTCGGCATCCGGGAGCA
CGCCGCGGCGGCCGTCGCCAACGGGATGGCCCTGACCAAGCTGCGGCCCTACTGGTCGGGATTCCTCATCTTCTCCGACT
ACGCCAAGGCAGCCATCCGGCTGTCCGCGCTGATGGAGATCCCGGTCGTCCACATCTTCACGCACGACTCCATCGGCGTC
GGCGAGGACGGACCCACCCACCAGCCGGTCGAACAGCTCGCGGGCCTGCGCGCGATGCCGGGACTGCTCGTGTTCCGCCC
CGGCGACGCGGGCGAAGTCGTCGAGACCTGGCGGCTGGTCGCCGGCCTGCGCCACGAGCCGGCGGCACTGGTCCTTTCCC
GCCAGGCGCTGCCCACGCTCGACCGAACGCGGCTGGCCGCCGCCTCGGGTGTCGCACGCGGTGCCTATGTGCTGGCGGAC
CCGCCCTCCGGCGAGCCACAGGTGATCCTGCTCGCCACCGGATCCGAAGTGTCCCTGGCGCTGGCCGCCCGGGACGAACT
CGCAGCCGACGGCATCGGGGCCCGGGTGGTCAGCATGCCGTGCTGGGAGCTGTTCGACCGTCAGCCGCGGGAGTACCGCG
ATCAGGTCCTGCCGCCGGCGGTGACCGCGCGGGTCGGCATCGAGCAGGCATCGACGTTCGGCTGGGACCGCTACGTGGGA
GACGGCGGAGCCGTCGTCGGCATGCACACCTACGGTGCCTCGGCGCCCCTGAGACAACTGCTCACGAAGTTCGGGTTCAC
CCCGCAGCGGGTGGCCGAGGTCGCACGGGAACTGGTGGAGTCCCGGCAGGAGGCGACGACATGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(366-538)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-350)

Transketolase, C-terminal domain (Transketolase_C)

(565-671)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.519

98.253

0.457