Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OHA26_RS36405 Genome accession   NZ_CP109136
Coordinates   8063457..8064458 (-) Length   333 a.a.
NCBI ID   WP_326633930.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01751     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 8058457..8069458
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA26_RS36395 (OHA26_36415) - 8058904..8061246 (-) 2343 WP_326827729.1 glycoside hydrolase family 3 N-terminal domain-containing protein -
  OHA26_RS36400 (OHA26_36420) - 8061378..8063312 (-) 1935 WP_326827730.1 cellulase family glycosylhydrolase -
  OHA26_RS36405 (OHA26_36425) cytR 8063457..8064458 (-) 1002 WP_326633930.1 LacI family DNA-binding transcriptional regulator Regulator
  OHA26_RS36410 (OHA26_36430) - 8064623..8065450 (-) 828 WP_326607084.1 carbohydrate ABC transporter permease -
  OHA26_RS36415 (OHA26_36435) - 8065464..8066405 (-) 942 WP_326625340.1 sugar ABC transporter permease -
  OHA26_RS36420 (OHA26_36440) - 8066438..8067730 (-) 1293 WP_326625339.1 ABC transporter substrate-binding protein -
  OHA26_RS36425 (OHA26_36445) - 8068250..8068756 (-) 507 WP_326607087.1 DNA starvation/stationary phase protection protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34942.88 Da        Isoelectric Point: 6.8468

>NTDB_id=671527 OHA26_RS36405 WP_326633930.1 8063457..8064458(-) (cytR) [Streptomyces sp. NBC_01751]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMAQESALYERLVAEGRIDGAVLTDARTDDPRPQLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
GAGVREAAAHLLELGHRRLAYIAGPADLVHTRLRRAAFEEALAEAGLRPVAVRHTDFTEEAAVAVTEELLALPDRPTALV
FPNDSMAVCGIGTAQRSGLRVPGEVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGENVPPPVLDGRPRL
VVRESTGPVPSAS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=671527 OHA26_RS36405 WP_326633930.1 8063457..8064458(-) (cytR) [Streptomyces sp. NBC_01751]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCTGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGAGGCCACCCG
CCGCCGGGTCCTGGACGCGGCGGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCCACGGCCCTGCGCAGGGCACGGACCC
GGACGATCGCGCTCGTCGTGCGACGCCCCACGGACGTGCTCGGTGCCGACCCGCACTTCAGCGAACTCATCACCGGTCTG
GAGGGCGAACTGGCTCCTCGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCCCAGGAGAGCGCGCTGTACGA
ACGGCTGGTCGCCGAAGGCCGGATCGACGGTGCGGTGCTGACCGACGCGCGGACGGACGACCCGCGCCCGCAGCTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGCGCACCGGACCCCGCGTCGCCGGTGCCCGGCGTCGGCCTCGGGCAGCAG
GGCGCCGGTGTCCGCGAGGCCGCCGCGCACCTGCTGGAGCTCGGCCACCGGCGTCTCGCGTACATCGCGGGTCCGGCCGA
CCTGGTGCACACCAGGCTGCGTCGGGCCGCCTTCGAGGAGGCGCTCGCCGAGGCAGGTCTGCGGCCCGTCGCTGTCCGGC
ACACCGATTTCACGGAGGAGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCCCTGCCCGACCGGCCCACCGCTCTGGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCCCAGCGCAGTGGGCTCCGGGTGCCCGGGGAAGTATCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACCACCGTGGACCAGCAGGTGCAAAGGGTCG
GTGCGGCCGCCGCCCGCACGCTGCTCGTCCGGTGCGGTGAGAACGTACCCCCGCCGGTCCTCGACGGACGCCCGCGCCTG
GTCGTACGGGAGTCGACCGGTCCCGTGCCGTCCGCGTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.398

100

0.36