Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   OHA26_RS11305 Genome accession   NZ_CP109136
Coordinates   2455429..2457531 (+) Length   700 a.a.
NCBI ID   WP_326631178.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01751     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2450429..2462531
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OHA26_RS11280 (OHA26_11285) - 2450696..2451709 (+) 1014 WP_326814229.1 COX15/CtaA family protein -
  OHA26_RS11285 (OHA26_11290) - 2451919..2452350 (+) 432 WP_326631184.1 hypothetical protein -
  OHA26_RS11290 (OHA26_11295) - 2452357..2453499 (-) 1143 WP_326814230.1 amidohydrolase -
  OHA26_RS11295 (OHA26_11300) - 2453619..2453978 (-) 360 WP_326631180.1 hypothetical protein -
  OHA26_RS11300 (OHA26_11305) - 2454075..2455028 (-) 954 WP_267005771.1 heme o synthase -
  OHA26_RS11305 (OHA26_11310) recP/tkt 2455429..2457531 (+) 2103 WP_326631178.1 transketolase Machinery gene
  OHA26_RS11310 (OHA26_11315) tal 2457566..2458684 (+) 1119 WP_326631176.1 transaldolase -
  OHA26_RS11315 (OHA26_11320) zwf 2458690..2460222 (+) 1533 WP_267005768.1 glucose-6-phosphate dehydrogenase -
  OHA26_RS11320 (OHA26_11325) opcA 2460219..2461241 (+) 1023 WP_326631174.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  OHA26_RS11325 (OHA26_11330) pgl 2461238..2462020 (+) 783 WP_326631173.1 6-phosphogluconolactonase -
  OHA26_RS11330 (OHA26_11335) - 2462101..2462460 (+) 360 WP_326631172.1 VOC family protein -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 75235.17 Da        Isoelectric Point: 5.1085

>NTDB_id=671470 OHA26_RS11305 WP_326631178.1 2455429..2457531(+) (recP/tkt) [Streptomyces sp. NBC_01751]
MSTKPTTTDLQWTELDQRAVDTVRVLAADAVQKVGNGHPGTAMSLAPAAYTLFQKVMRHDPADADWTGRDRFVLSAGHTS
LTLYIQLYLAGYGLELDDLKAFRTWGSKTPGHPEYGHTTGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAAPGTSPF
DHMVWAIAGDGCLQEGISAEASSLAGHQKLGNLVLLWDDNHISIEGDTETAVSEDTLKRYEAYGWHVQRVAQLPNGDLDP
AGLYDALQAAKAETGRPSFIAARSIIAWPAPHAQNTEASHGSALGDDEVAATKKVLGFDPEKTFEVSDEVISHTREALDR
GREAKAEWEKKFAAWRTANPERAAEFDRISAGELPAGWEDKLPVFEPGKAVATRAASGKVLQALGEIIPELWGGSADLAG
SNNTTIDKTSSFLPAGNPLPGADPYGRTIHFGIREHAMAAAMNGIALHGNTRIYGGTFLVFSDYMRNAVRLSALMHLPVT
YVWTHDSIGLGEDGPTHQPVEHLASLRAIPGLNIVRPADANETSIVWREILRRYTKVFGKGAPHGLALTRQGVPTYEANE
DAAKGGYVLFDSEGTDGQSAEPQVLLIGTGSEVHLAVEAREELQAAGIPTRVVSMPSVEWFEEQDQAYKDSVLPPSVKAR
VAVEAGIGLTWHRYVGDAGRIVSLEHFGASADAKVLFREFGFTGEHVAAAARESLADVTR

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=671470 OHA26_RS11305 WP_326631178.1 2455429..2457531(+) (recP/tkt) [Streptomyces sp. NBC_01751]
GTGAGCACCAAGCCGACCACCACAGACCTCCAGTGGACCGAATTGGACCAGCGGGCCGTGGACACTGTCCGCGTCCTTGC
CGCCGACGCCGTACAGAAGGTCGGAAACGGCCACCCGGGTACGGCGATGAGCCTGGCTCCCGCCGCGTACACCCTTTTCC
AGAAGGTGATGCGGCACGACCCCGCCGACGCGGACTGGACGGGCCGCGACCGGTTCGTGCTCTCGGCGGGCCACACCAGC
CTGACCCTGTACATCCAGCTCTACCTGGCCGGGTACGGCTTGGAGCTCGATGACCTCAAGGCGTTCCGTACCTGGGGTTC
GAAGACCCCCGGGCACCCGGAGTACGGCCACACCACCGGTGTCGAGACGACGACGGGCCCGCTGGGCCAGGGTGTCGCCA
ACGCCGTGGGCATGGCGATGGCCGCCCGTTACGAGCGCGGTCTGTTCGACCCGGAGGCGGCCCCCGGCACCTCCCCGTTC
GACCACATGGTCTGGGCCATCGCGGGTGACGGCTGCCTGCAGGAGGGCATCTCCGCGGAGGCGTCCTCGCTGGCCGGGCA
CCAGAAGCTGGGCAACCTGGTCCTGCTCTGGGACGACAACCACATCTCCATCGAGGGCGACACGGAGACCGCGGTCTCCG
AGGACACCCTGAAGCGGTACGAGGCGTACGGCTGGCACGTCCAGCGCGTCGCCCAGCTGCCCAACGGCGACCTGGACCCG
GCGGGTCTGTACGACGCGCTGCAAGCGGCCAAGGCCGAGACCGGGCGTCCGTCGTTCATCGCGGCCCGCTCGATCATCGC
CTGGCCCGCCCCGCACGCCCAGAACACCGAGGCCTCGCACGGCTCGGCGCTCGGCGACGACGAGGTCGCCGCGACCAAGA
AGGTCCTGGGCTTCGACCCGGAAAAGACCTTCGAGGTCTCCGACGAGGTCATCTCGCACACCCGTGAGGCGCTGGACCGC
GGCCGTGAGGCCAAGGCCGAGTGGGAGAAGAAGTTCGCCGCGTGGCGCACCGCCAACCCGGAGCGCGCCGCCGAGTTCGA
CCGGATCTCGGCGGGCGAGCTGCCCGCGGGCTGGGAGGACAAGCTCCCGGTCTTCGAGCCGGGCAAGGCGGTCGCCACCC
GCGCCGCCTCCGGCAAGGTGCTCCAGGCGCTCGGCGAGATCATCCCCGAGCTGTGGGGCGGCTCCGCCGACCTCGCCGGC
TCGAACAACACCACGATCGACAAGACGTCGTCGTTCCTCCCGGCGGGCAACCCGCTGCCGGGCGCGGACCCGTACGGCCG
AACGATCCACTTCGGTATCCGCGAGCACGCCATGGCCGCGGCCATGAACGGCATCGCACTGCACGGCAACACCCGCATCT
ACGGCGGCACCTTCCTGGTGTTCTCCGACTACATGCGCAACGCCGTGCGTCTGTCCGCGCTGATGCACCTGCCGGTGACG
TACGTGTGGACGCACGACTCGATCGGTCTCGGCGAGGACGGCCCGACCCACCAGCCGGTGGAGCACCTGGCCTCGCTGCG
CGCCATCCCGGGCCTGAACATCGTCCGCCCGGCCGACGCCAACGAGACCTCCATCGTCTGGCGCGAGATCCTGCGCCGCT
ACACCAAGGTGTTCGGCAAGGGCGCCCCGCACGGTCTGGCGCTGACCCGCCAGGGCGTGCCGACGTACGAGGCGAACGAG
GACGCGGCCAAGGGCGGCTATGTGCTCTTCGACTCCGAAGGGACCGACGGGCAGAGCGCGGAGCCGCAGGTCCTCCTGAT
CGGTACCGGTTCCGAGGTGCACCTCGCCGTCGAGGCGCGCGAAGAGCTGCAGGCGGCCGGCATCCCGACCCGGGTCGTGT
CGATGCCCTCCGTCGAGTGGTTCGAGGAGCAGGACCAGGCGTACAAGGACAGCGTTCTGCCGCCGTCCGTGAAGGCCCGC
GTCGCCGTCGAGGCGGGCATCGGCCTGACCTGGCACCGGTACGTCGGTGACGCCGGCCGGATCGTCTCGCTGGAGCACTT
CGGTGCCTCGGCCGACGCCAAGGTCCTCTTCCGCGAGTTCGGCTTCACCGGCGAGCACGTGGCCGCCGCAGCGCGGGAAT
CCCTCGCCGACGTCACGCGCTGA

Domains

Predicted by InterProScan.

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(16-355)

Transketolase, pyrimidine binding domain (Transket_pyr)

(370-533)

Transketolase, C-terminal domain (Transketolase_C)

(579-687)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

44.802

97.571

0.437