Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   MUA58_RS06090 Genome accession   NZ_CP094729
Coordinates   1283763..1284830 (+) Length   355 a.a.
NCBI ID   WP_002457726.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain IVB6210     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1278763..1289830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA58_RS06060 (MUA58_06055) - 1279181..1280641 (+) 1461 WP_002457727.1 rhomboid family intramembrane serine protease -
  MUA58_RS06065 (MUA58_06060) - 1280625..1280825 (+) 201 WP_002446537.1 YqgQ family protein -
  MUA58_RS06070 (MUA58_06065) - 1280825..1281811 (+) 987 WP_002446536.1 ROK family glucokinase -
  MUA58_RS06075 (MUA58_06070) - 1281811..1282137 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  MUA58_RS06080 (MUA58_06075) - 1282137..1282760 (+) 624 WP_262614732.1 MBL fold metallo-hydrolase -
  MUA58_RS06085 (MUA58_06080) comGA 1282817..1283791 (+) 975 WP_002446534.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA58_RS06090 (MUA58_06085) comGB 1283763..1284830 (+) 1068 WP_002457726.1 competence type IV pilus assembly protein ComGB Machinery gene
  MUA58_RS06095 (MUA58_06090) comGC 1284848..1285165 (+) 318 WP_002446532.1 competence type IV pilus major pilin ComGC Machinery gene
  MUA58_RS06100 (MUA58_06095) comGD 1285155..1285592 (+) 438 WP_002446531.1 competence type IV pilus minor pilin ComGD -
  MUA58_RS06105 (MUA58_06100) - 1285579..1285872 (+) 294 WP_002446530.1 hypothetical protein -
  MUA58_RS06110 (MUA58_06105) - 1285796..1286287 (+) 492 WP_002457724.1 competence type IV pilus minor pilin ComGF -
  MUA58_RS06115 (MUA58_06110) - 1286452..1286964 (+) 513 WP_002457723.1 shikimate kinase -
  MUA58_RS06120 (MUA58_06115) gcvT 1287182..1288273 (+) 1092 WP_002457722.1 glycine cleavage system aminomethyltransferase GcvT -
  MUA58_RS06125 (MUA58_06120) gcvPA 1288293..1289639 (+) 1347 WP_002446526.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42403.61 Da        Isoelectric Point: 10.1418

>NTDB_id=671466 MUA58_RS06090 WP_002457726.1 1283763..1284830(+) (comGB) [Staphylococcus epidermidis strain IVB6210]
MKKLSINTFKYKRNKYLTEIQSINLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLLTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQLSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNRLFKEANRGLPLPTILMNLQCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=671466 MUA58_RS06090 WP_002457726.1 1283763..1284830(+) (comGB) [Staphylococcus epidermidis strain IVB6210]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAAACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCTTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATAACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTACTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGCTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATCGTCTTTTTAAAGAAGCTAATAG
AGGGCTCCCGTTACCTACTATATTAATGAATCTACAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAATTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATTTTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(225-346)

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.596

100

0.487
  comGB Staphylococcus aureus N315

48.596

100

0.487