Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG909_RS25275 Genome accession   NZ_CP109132
Coordinates   5852757..5853554 (-) Length   265 a.a.
NCBI ID   WP_326700313.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5847757..5858554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS25265 (OG909_25275) - 5848368..5850248 (+) 1881 WP_326700311.1 IucA/IucC family siderophore biosynthesis protein -
  OG909_RS25270 (OG909_25280) - 5850413..5852380 (+) 1968 WP_326700312.1 ATP-dependent DNA helicase -
  OG909_RS25275 (OG909_25285) dinR/lexA 5852757..5853554 (-) 798 WP_326700313.1 transcriptional repressor LexA Regulator
  OG909_RS25280 (OG909_25290) nrdR 5854061..5854576 (+) 516 WP_326700314.1 transcriptional regulator NrdR -
  OG909_RS25285 (OG909_25295) - 5854734..5857649 (+) 2916 WP_326700315.1 vitamin B12-dependent ribonucleotide reductase -
  OG909_RS25290 (OG909_25300) - 5857917..5858447 (-) 531 WP_326700316.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28786.55 Da        Isoelectric Point: 7.0792

>NTDB_id=671445 OG909_RS25275 WP_326700313.1 5852757..5853554(-) (dinR/lexA) [Streptomyces sp. NBC_01754]
MTTTADSATITAQDHRSQSRLEPVHAMNDAVTNPEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAIMDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPH
NSAYQPIQGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=671445 OG909_RS25275 WP_326700313.1 5852757..5853554(-) (dinR/lexA) [Streptomyces sp. NBC_01754]
GTGACCACCACCGCTGACAGTGCCACCATCACCGCCCAGGACCACCGCTCCCAGAGCCGACTTGAGCCGGTGCATGCCAT
GAATGACGCAGTCACGAATCCGGAGGGGCCCGAGCCCGCACGACCCGCGCGCTCCTTGCCCGGAAGGCCCCCGGGGATCC
GGGCCGACAGCTCGGGGCTCACCGACCGGCAGCGGCGCGTGATCGAGGTCATCCGTGACTCCGTGCAGCGGCGCGGCTAC
CCACCGTCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACCTCGTCCGTCGCACACCAGCTGATGGCTCTGGA
GCGCAAGGGCTTCCTGCGCCGTGACCCGCACCGCCCGCGTGCCTACGAAGTACGCGGTTCCGACCAGCCCAGCACCCAGC
CGACGGACACCACCGGAAAGCCGGCCGCTTCGTATGTGCCACTGGTCGGCCGGATCGCGGCCGGCGGACCGATCCTGGCG
GAGGAGTCCGTCGAGGACGTCTTTCCGCTGCCGCGCCAGCTCGTCGGAGACGGTGAGCTGTTCGTCCTGAAGGTCGTCGG
CGATTCCATGATCGAAGCCGCGATCATGGACGGCGACTGGGTCACCGTGCGTCGGCAGCCCGTCGCGGAGAACGGCGACA
TCGTGGCGGCCATGCTGGACGGCGAGGCGACCGTCAAGCGCTTCAAGCGCGAGGACGGCCATGTGTGGCTGCTTCCGCAC
AACTCCGCGTACCAGCCCATCCAGGGTGACGAGGCGACCATCCTCGGCAAGGTCGTGGCAGTGCTCCGGCGCGTGTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(58-121)

Peptidase S24-like (Peptidase_S24)

(147-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80

0.37