Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG909_RS23110 Genome accession   NZ_CP109132
Coordinates   5383299..5384282 (-) Length   327 a.a.
NCBI ID   WP_326699929.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5378299..5389282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS23100 (OG909_23110) - 5381040..5382554 (-) 1515 WP_326699927.1 cytosine permease -
  OG909_RS23105 (OG909_23115) - 5382829..5382990 (-) 162 WP_326699928.1 hypothetical protein -
  OG909_RS23110 (OG909_23120) cytR 5383299..5384282 (-) 984 WP_326699929.1 LacI family DNA-binding transcriptional regulator Regulator
  OG909_RS23115 (OG909_23125) - 5384720..5386648 (-) 1929 WP_326699930.1 ABC transporter ATP-binding protein -
  OG909_RS23120 (OG909_23130) - 5386645..5388471 (-) 1827 WP_326699931.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 33918.60 Da        Isoelectric Point: 6.7556

>NTDB_id=671436 OG909_RS23110 WP_326699929.1 5383299..5384282(-) (cytR) [Streptomyces sp. NBC_01754]
MNIRDIAAEAGVSAATASRALTGKGRVSAATVERVRSVADRLHFQPSEIARSLSSGRSHSVGLIVPDITNPFFPELMAGA
ESAAKALGQTILLAAAPGAVSAREDLRLLRSRGVDGFIVVGNPFASSAQLREAAGARPLVVVDRAESVTDISTVVSDHVE
GATLAVRHLLALGHTRIAHISGPSELDVTALRVSGYEREMRAAGLRPVVVEGGFTADCGADAVCRLLDGPQPPTAVTTAN
DISAIGAMNAVFSRGGRVPEDLSVVGYDDIALAALVRPGLTTVAQEIGELGSRAVAELDRQMSGDLAVRTVPLRARLVER
CTTRAPS

Nucleotide


Download         Length: 984 bp        

>NTDB_id=671436 OG909_RS23110 WP_326699929.1 5383299..5384282(-) (cytR) [Streptomyces sp. NBC_01754]
GTGAACATCCGAGACATCGCAGCCGAGGCCGGTGTGTCCGCCGCGACGGCGTCGCGCGCGCTCACCGGCAAGGGCCGGGT
CTCCGCCGCGACGGTGGAACGGGTGCGCTCCGTCGCGGATCGGCTGCACTTCCAACCGAGCGAGATAGCACGGAGCCTGT
CTTCGGGCCGCTCACACTCTGTCGGACTGATCGTTCCGGATATCACGAACCCGTTCTTTCCCGAGCTCATGGCCGGCGCG
GAGAGCGCAGCGAAGGCACTCGGGCAGACCATCCTGCTCGCCGCGGCGCCCGGGGCGGTGTCGGCACGAGAGGATCTCCG
ACTGTTGCGTTCGCGCGGGGTCGACGGCTTCATCGTGGTGGGCAATCCGTTCGCCTCCTCCGCGCAGCTCCGGGAGGCAG
CCGGGGCGCGCCCGCTCGTCGTCGTCGACCGGGCGGAGTCCGTCACCGACATCTCGACGGTGGTCTCCGATCACGTCGAG
GGTGCCACGCTCGCGGTGCGCCACCTGCTGGCGCTGGGGCACACTCGGATCGCCCATATCAGCGGCCCCTCCGAACTCGA
TGTCACCGCGCTGCGTGTCAGCGGATACGAGAGGGAGATGCGCGCGGCGGGCCTCCGGCCAGTCGTCGTCGAGGGCGGTT
TCACAGCGGACTGCGGAGCCGACGCCGTGTGCCGGCTGCTCGACGGGCCCCAGCCCCCGACGGCCGTCACCACCGCGAAC
GACATCTCCGCCATCGGTGCCATGAACGCCGTGTTCTCCCGCGGTGGGCGGGTGCCGGAAGATCTGAGCGTCGTCGGCTA
CGACGACATCGCGCTGGCGGCGCTCGTCCGTCCCGGCTTGACGACGGTCGCCCAGGAGATCGGGGAGCTGGGTTCACGCG
CCGTGGCGGAACTCGACCGGCAGATGTCCGGCGATCTTGCGGTACGGACGGTCCCGCTCCGTGCCCGTCTCGTCGAGCGC
TGCACGACGCGGGCGCCGTCATGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(166-323)

Bacterial regulatory proteins, lacI family (LacI)

(3-47)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.254

100

0.367