Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG909_RS08565 Genome accession   NZ_CP109132
Coordinates   2124674..2126596 (+) Length   640 a.a.
NCBI ID   WP_326697371.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2119674..2131596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS08550 (OG909_08545) - 2120788..2121108 (+) 321 WP_326697368.1 YtxH domain-containing protein -
  OG909_RS08555 (OG909_08550) - 2121286..2122731 (+) 1446 WP_326697369.1 FGGY family carbohydrate kinase -
  OG909_RS08560 (OG909_08555) rcrP 2122941..2124674 (+) 1734 WP_326697370.1 ABC transporter ATP-binding protein Regulator
  OG909_RS08565 (OG909_08560) rcrQ 2124674..2126596 (+) 1923 WP_326697371.1 ABC transporter ATP-binding protein Regulator
  OG909_RS08570 (OG909_08565) - 2126630..2126872 (+) 243 WP_326697372.1 hypothetical protein -
  OG909_RS08575 (OG909_08570) - 2126902..2127966 (-) 1065 WP_326697373.1 RNA polymerase sigma factor -
  OG909_RS08580 (OG909_08575) dnaG 2128211..2130118 (-) 1908 WP_326697374.1 DNA primase -
  OG909_RS08585 (OG909_08580) - 2130200..2131459 (-) 1260 WP_326697375.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68661.67 Da        Isoelectric Point: 5.0379

>NTDB_id=671402 OG909_RS08565 WP_326697371.1 2124674..2126596(+) (rcrQ) [Streptomyces sp. NBC_01754]
MAGPGGQTAAAPTERSADFKASGKRLLGRFSKEKSSLYLMLGAGTLSVALSVLGPKILGRATDLIFAGIVGRQTSGGATK
EQTVDGLREQGDGGLADMLSGVDFVPGHGIDFHAVGNVLLVALAVYVGAGLLMLVASRVSIRIINRVVFRLREDLQTKLA
RLPLSYFDGQKRGEVLSRATNDIDNISQTLQQTMGQLVNSLLTIVGVLIMMFWVSPLLALVALITVPLSVLVAARVGKRS
QPHFVAQWQVTGRLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNDALYGAGFKAQFNSGMMQPLMMFVSNLNYVLVAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLLQSGVASAERVFEMLDAEEQGPDPVAAERPEDLRGNVVLDKV
SFRYDPEKPLIEDLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGTDVSKMSRDELRSGIGMVLQDTWL
FGGTIAENIAYGASREVGREEIEEAAKAAHADRFVRTLPDGYDTVLDDEGSGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLAAGGAYARLYAAQFAEALAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=671402 OG909_RS08565 WP_326697371.1 2124674..2126596(+) (rcrQ) [Streptomyces sp. NBC_01754]
ATGGCTGGACCGGGCGGACAAACGGCCGCGGCACCCACCGAGCGGTCCGCGGACTTCAAGGCCTCGGGCAAGCGGCTGCT
GGGGCGGTTCAGCAAGGAGAAGTCCTCGCTGTACCTGATGCTGGGGGCCGGCACGCTGAGCGTGGCGCTCTCGGTGCTCG
GGCCGAAGATCCTCGGCCGGGCCACGGACCTCATCTTCGCGGGGATCGTCGGCCGGCAGACGTCGGGCGGAGCGACGAAG
GAGCAGACCGTCGACGGTCTGCGCGAGCAGGGTGACGGCGGGCTCGCCGACATGCTGAGCGGGGTGGACTTCGTCCCCGG
CCACGGCATCGACTTCCACGCGGTGGGCAACGTCCTGCTGGTGGCGCTGGCGGTCTACGTCGGCGCGGGGCTGCTGATGC
TGGTGGCGTCCCGGGTGTCGATCCGGATCATCAACCGGGTCGTCTTCCGGCTCCGGGAGGACCTTCAGACGAAGCTGGCG
CGGCTGCCGCTGTCGTACTTCGACGGGCAGAAGCGGGGTGAGGTACTGAGCCGGGCGACCAACGACATCGACAACATCTC
GCAGACCCTCCAGCAGACGATGGGCCAGCTCGTCAACTCCCTGCTGACCATCGTCGGCGTCCTGATCATGATGTTCTGGG
TCTCGCCGCTGCTCGCCCTGGTGGCGCTGATCACCGTCCCGCTGTCGGTGCTGGTGGCGGCGCGGGTCGGGAAGCGGTCG
CAGCCGCACTTCGTGGCGCAGTGGCAGGTGACGGGCAGACTCAACGCGCACATCGAGGAGATGTACACCGGTCACACCCT
GGTGAAGGTCTTCGGACGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTGTACGGCGCGGGCTTCA
AGGCCCAGTTCAACAGCGGGATGATGCAGCCGCTGATGATGTTCGTGTCCAACCTGAACTACGTGCTGGTCGCGGTCGTC
GGCGGGCTGCGGGTGGCGTCGGGCACGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGACCCAGGTCGCCTCGATGGCCAACCTGCTGCAGTCGGGCGTCGCCTCGGCCGAGCGGGTCTTCGAGATGCTGG
ACGCCGAGGAGCAGGGCCCGGACCCGGTCGCGGCCGAGCGGCCGGAGGACCTGCGCGGCAACGTCGTCCTGGACAAGGTG
TCCTTCCGGTACGACCCGGAGAAGCCCCTCATCGAGGACCTGTCGCTGAGTGTCGAACCGGGGCAGACGGTCGCGATCGT
GGGCCCGACCGGCGCCGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCACCC
TGGACGGCACCGACGTGTCGAAGATGTCGCGCGACGAACTGCGCTCCGGCATAGGGATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGCGCCTCCCGCGAGGTCGGCCGCGAGGAGATCGAGGAGGCGGCGAA
GGCGGCTCACGCCGACCGTTTCGTCCGTACCCTGCCGGACGGATACGACACGGTGCTCGACGACGAGGGGTCCGGGGTCA
GCGCGGGTGAGAAGCAGTTGATCACCATCGCGCGGGCGTTCCTGTCGGATCCGGTGATCCTGGTGCTCGACGAGGCCACC
AGCTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCCGCCTCGCGCACGGCCGTACGAGCTTCGTGAT
CGCCCACCGGCTCTCGACCATCCGGGACGCGGATGTGATCCTGGTGATGGAGAACGGGTCGATCGTCGAGCAGGGCACGC
ACGACGAGCTGCTGGCGGCCGGGGGCGCGTACGCCCGGCTGTACGCCGCGCAGTTCGCCGAGGCGCTGGCCGAGGTCGAC
TGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(45-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.697

82.5

0.369