Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG909_RS08560 Genome accession   NZ_CP109132
Coordinates   2122941..2124674 (+) Length   577 a.a.
NCBI ID   WP_326697370.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01754     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2117941..2129674
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG909_RS08525 (OG909_08520) - 2119217..2119428 (-) 212 Protein_1686 hypothetical protein -
  OG909_RS08530 (OG909_08525) - 2119545..2119820 (+) 276 WP_326697367.1 hypothetical protein -
  OG909_RS08550 (OG909_08545) - 2120788..2121108 (+) 321 WP_326697368.1 YtxH domain-containing protein -
  OG909_RS08555 (OG909_08550) - 2121286..2122731 (+) 1446 WP_326697369.1 FGGY family carbohydrate kinase -
  OG909_RS08560 (OG909_08555) rcrP 2122941..2124674 (+) 1734 WP_326697370.1 ABC transporter ATP-binding protein Regulator
  OG909_RS08565 (OG909_08560) rcrQ 2124674..2126596 (+) 1923 WP_326697371.1 ABC transporter ATP-binding protein Regulator
  OG909_RS08570 (OG909_08565) - 2126630..2126872 (+) 243 WP_326697372.1 hypothetical protein -
  OG909_RS08575 (OG909_08570) - 2126902..2127966 (-) 1065 WP_326697373.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62297.37 Da        Isoelectric Point: 5.7521

>NTDB_id=671401 OG909_RS08560 WP_326697370.1 2122941..2124674(+) (rcrP) [Streptomyces sp. NBC_01754]
MLIKLLRTHLGPYRKTILLLVALQFLQTCASLYLPSLNADIIDNGVVVGDTGYILEFGGVMIAVSVVQVLCNIGAVYFGA
RTASALGRDVRASIFARVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIVMALGQDVKLSAV
LLAVVPVLGIAVSLIVKRMRPLFRTMQTRLDTVNRVLREQITGNRVIRAFVRDTYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVSVSSVAVVWFGAHRIDGGGMEIGALTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLATESSVVP
PEAPVTELRTHGHLEIRDAEFRYPGAEEPVLRAVGLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTGGDVLVGGRDVR
TLDPALLAESVGLVPQKPYLFSGTVATNLRYGNPDASDEELWHALEVAQAKEFVERLEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVRRPEIYLFDDSFSALDYATDAALRAALAQETAGATVVIVAQRVSTIRDADQILVLDEGRVVGTGTHGELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671401 OG909_RS08560 WP_326697370.1 2122941..2124674(+) (rcrP) [Streptomyces sp. NBC_01754]
GTGCTCATAAAACTCCTGCGGACCCATCTGGGGCCGTACAGAAAAACGATCCTGCTGCTGGTGGCACTCCAGTTCCTCCA
GACCTGCGCCAGCCTCTATCTGCCCAGCCTCAACGCGGACATCATCGACAACGGTGTCGTGGTGGGGGACACGGGCTACA
TCCTGGAGTTCGGCGGCGTGATGATCGCCGTCAGTGTCGTCCAGGTCCTCTGCAACATCGGCGCGGTGTACTTCGGCGCC
CGTACCGCGTCCGCGCTCGGACGCGATGTGCGGGCGTCGATCTTCGCCCGGGTGCAGTCCTTCTCGGCACGTGAGGTGGG
GCGCTTCGGCGCCCCCTCCCTCATCACCCGCACCACGAACGACGTCCAGCAGATCCAGATGCTCGTGCTGATGACGTTCA
CGCTGATGGTGTCGGCTCCCATCATGTGCGTCGGCGGCATCGTCATGGCACTCGGCCAGGACGTGAAGCTGTCGGCGGTG
CTGCTGGCGGTGGTGCCGGTGCTCGGTATCGCCGTGAGCCTCATCGTGAAGCGGATGCGGCCGCTGTTCCGCACGATGCA
GACGCGGCTGGACACGGTGAACCGGGTGTTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCCTTCGTCCGCGACA
CCTACGAGGAGAAGCGTTTCCGCGGCGCCAACACCGAGCTCACGGACGTCGCTCTGTCGACGGGCCGGCTGATGGCTCTG
ATGTTCCCGACCGTGATGACGGTGGTGAGCGTCTCGTCCGTCGCGGTCGTCTGGTTCGGCGCCCACCGCATCGACGGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCGCGTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATACAGGAGGTCCTGGCGACGGAGTCGAGCGTGGTCCCG
CCCGAGGCCCCGGTCACGGAGCTGCGCACCCACGGGCACCTGGAGATACGGGACGCCGAGTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTCCGGGCGGTCGGCCTGGTGGCGCGGCCCGGTGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTCGTGCCGCGGCTGTTCGACGTGACGGGCGGTGACGTGCTCGTCGGCGGCCGGGACGTGCGG
ACGCTGGACCCGGCACTGCTGGCGGAGTCGGTGGGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAACCTGCGGTACGGCAATCCCGACGCCAGTGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCCCAGGCGAAGGAGTTCG
TGGAGCGGCTGGAGCACGGTCTCGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCCATCGCGCGGACCCTGGTGCGGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCCGCGCTGCGCGCCGCGCTGGCCCAGGAGACGGCCGGTGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCAGATCCTGGTGCTGGACGAGGGCCGGGTCGTCGGCACGGGTACCCACGGGGAACTGATGGACGGAAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(353-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.135

97.747

0.402