Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA17_RS11150 Genome accession   NZ_CP094725
Coordinates   2323995..2325368 (-) Length   457 a.a.
NCBI ID   WP_103207172.1    Uniprot ID   -
Organism   Staphylococcus felis strain IVB6254     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2318995..2330368
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA17_RS11125 (MUA17_11130) cysE 2319131..2319760 (-) 630 WP_174688364.1 serine O-acetyltransferase -
  MUA17_RS11130 (MUA17_11135) gltX 2320216..2321670 (-) 1455 WP_262632494.1 glutamate--tRNA ligase -
  MUA17_RS11135 (MUA17_11140) ispF 2321745..2322227 (-) 483 WP_103207175.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA17_RS11140 (MUA17_11145) ispD 2322220..2322918 (-) 699 WP_116253757.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA17_RS11145 (MUA17_11150) - 2322915..2323982 (-) 1068 WP_262632495.1 PIN/TRAM domain-containing protein -
  MUA17_RS11150 (MUA17_11155) radA 2323995..2325368 (-) 1374 WP_103207172.1 DNA repair protein RadA Machinery gene
  MUA17_RS11155 (MUA17_11160) - 2325555..2328014 (-) 2460 WP_103207171.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA17_RS11160 (MUA17_11165) - 2328030..2329034 (-) 1005 WP_103207170.1 protein arginine kinase -
  MUA17_RS11165 (MUA17_11170) - 2329027..2329554 (-) 528 WP_115855808.1 UvrB/UvrC motif-containing protein -
  MUA17_RS11170 (MUA17_11175) - 2329568..2330029 (-) 462 WP_103207167.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50330.95 Da        Isoelectric Point: 7.7464

>NTDB_id=671375 MUA17_RS11150 WP_103207172.1 2323995..2325368(-) (radA) [Staphylococcus felis strain IVB6254]
MAKKKVIFECTACGYQSPKWMGKCPNCGAWNTLEESIMQKSAQPKHGVRAQKANVAKVQKLSDIKQEQSPRILTNSDEFN
RVLGGGIVEGSLVLIGGDPGIGKSTLLLQMCAALSQHKRVLYITGEESLNQTKLRADRLDEDASQLNVFAETDLEIIHET
VKKVEPQLIVVDSIQTIYHPEISSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEG
DEHHAYRILRAVKNRFGSTNEMGIFEMKQTGLKSVPNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQALVTPTTFNN
PRRMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIVIATASSFQNKAVDGLDCFIGEVGLTGE
VRRVSRIEQRVQEAAKLGFKRVILPQTNIGGWTYPEQIEVIGVTSVHEALQKAFKSK

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=671375 MUA17_RS11150 WP_103207172.1 2323995..2325368(-) (radA) [Staphylococcus felis strain IVB6254]
GTGGCAAAGAAAAAAGTCATATTTGAATGTACAGCGTGTGGGTATCAATCACCTAAGTGGATGGGCAAATGTCCTAATTG
TGGCGCTTGGAATACACTGGAAGAATCTATTATGCAAAAATCAGCACAGCCTAAACATGGTGTAAGGGCACAAAAGGCCA
ATGTAGCCAAAGTGCAAAAACTGAGCGACATTAAACAAGAACAGTCACCCCGAATTCTTACAAATAGCGATGAATTTAAT
CGTGTGCTTGGTGGAGGTATAGTAGAAGGATCACTCGTCTTAATTGGAGGCGATCCAGGTATTGGAAAGTCCACATTATT
GTTACAAATGTGTGCTGCACTTTCTCAGCATAAACGTGTTTTATATATTACCGGTGAAGAGTCTTTAAATCAAACGAAAT
TACGTGCAGATCGGCTTGATGAAGATGCGAGTCAACTCAATGTATTTGCCGAAACAGATTTAGAAATCATACATGAAACA
GTGAAAAAAGTAGAGCCGCAACTGATTGTAGTGGACTCGATACAAACCATCTATCATCCAGAAATTAGTTCAGCACCTGG
ATCAGTTTCACAAGTTAGAGAGAGTACCCAAAGTTTAATGCATATCGCAAAGCAAATGAATATCGCTACGTTTATTGTGG
GGCATGTTACAAAAGAAGGTCAAATTGCAGGACCACGTTTACTTGAGCATATGGTCGACACAGTTTTGTATTTTGAAGGT
GACGAACACCATGCTTATCGAATATTACGTGCGGTTAAAAACCGCTTTGGCTCGACCAATGAAATGGGTATTTTTGAAAT
GAAGCAAACAGGTTTAAAAAGTGTGCCCAATCCATCTGAAATGTTTTTGGAAGAGCGATCAACCAACGTCCCAGGTTCGA
CGATTGTAGCGACTATGGAAGGGACAAGACCACTTTTGATTGAAGTACAAGCGCTTGTGACTCCGACTACATTTAACAAT
CCAAGACGTATGGCCACGGGCATTGACCATAATCGATTAAGCTTATTAATGGCCGTGCTTGAAAAGAAAGAAGGCTATCT
CTTACAGCAGCAAGATGCTTACATAAAAGTAGCTGGTGGTGTCAAGTTAACTGAGCCTGCTGTTGATTTAGGGATTGTGA
TTGCAACAGCGTCTAGTTTTCAAAATAAAGCCGTTGATGGTTTGGACTGTTTTATAGGAGAGGTCGGTCTAACTGGTGAA
GTACGCCGTGTGTCACGAATAGAACAACGTGTTCAAGAAGCAGCTAAATTGGGATTTAAGCGTGTTATTTTACCACAAAC
CAATATTGGCGGTTGGACTTATCCAGAACAAATTGAAGTTATCGGTGTGACATCTGTTCACGAAGCACTTCAAAAAGCCT
TTAAATCAAAGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(72-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

66.157

100

0.663
  radA Streptococcus pneumoniae Rx1

58.59

99.344

0.582
  radA Streptococcus pneumoniae D39

58.59

99.344

0.582
  radA Streptococcus pneumoniae R6

58.59

99.344

0.582
  radA Streptococcus pneumoniae TIGR4

58.59

99.344

0.582
  radA Streptococcus mitis NCTC 12261

58.59

99.344

0.582
  radA Streptococcus mitis SK321

58.59

99.344

0.582