Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG807_RS29040 Genome accession   NZ_CP109124
Coordinates   6421888..6422100 (+) Length   70 a.a.
NCBI ID   WP_326745343.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01760     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6416888..6427100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG807_RS28995 (OG807_29050) - 6417033..6417380 (+) 348 WP_326745334.1 hypothetical protein -
  OG807_RS29000 (OG807_29055) - 6417377..6417607 (+) 231 WP_326745335.1 hypothetical protein -
  OG807_RS29005 (OG807_29060) - 6417664..6417990 (-) 327 WP_326745336.1 hypothetical protein -
  OG807_RS29010 (OG807_29065) - 6418011..6418280 (-) 270 WP_326745337.1 hypothetical protein -
  OG807_RS29015 (OG807_29070) - 6418280..6418720 (-) 441 WP_326745338.1 hypothetical protein -
  OG807_RS29020 (OG807_29075) - 6419306..6420328 (-) 1023 WP_326745339.1 fibronectin type III domain-containing protein -
  OG807_RS29025 (OG807_29080) - 6420366..6420596 (-) 231 WP_326745340.1 hypothetical protein -
  OG807_RS29030 (OG807_29085) - 6420980..6421345 (+) 366 WP_326745341.1 hypothetical protein -
  OG807_RS29035 (OG807_29090) - 6421409..6421636 (+) 228 WP_326745342.1 hypothetical protein -
  OG807_RS29040 (OG807_29095) dinR/lexA 6421888..6422100 (+) 213 WP_326745343.1 MarR family transcriptional regulator Regulator
  OG807_RS29045 (OG807_29100) - 6422219..6422395 (-) 177 WP_326745344.1 hypothetical protein -
  OG807_RS29050 (OG807_29105) - 6422602..6423165 (-) 564 WP_326745345.1 hypothetical protein -
  OG807_RS29055 (OG807_29110) - 6423286..6423546 (+) 261 WP_326745346.1 hypothetical protein -
  OG807_RS29060 (OG807_29115) - 6423573..6423851 (-) 279 WP_326745347.1 hypothetical protein -
  OG807_RS29065 (OG807_29120) - 6425989..6426645 (+) 657 WP_326745348.1 hypothetical protein -

Sequence

Protein


Download         Length: 70 a.a.        Molecular weight: 7800.88 Da        Isoelectric Point: 11.5620

>NTDB_id=671365 OG807_RS29040 WP_326745343.1 6421888..6422100(+) (dinR/lexA) [Streptomyces sp. NBC_01760]
MNGGLTDRQARILRCIRDHIIDTGESPSVRQIGALVGLSSSSSVAYQLGRLEERGLISRTGRHWRNIHMT

Nucleotide


Download         Length: 213 bp        

>NTDB_id=671365 OG807_RS29040 WP_326745343.1 6421888..6422100(+) (dinR/lexA) [Streptomyces sp. NBC_01760]
ATGAACGGTGGGCTGACCGACCGGCAGGCGCGCATCCTCCGGTGTATCCGGGACCACATCATCGACACGGGCGAGAGCCC
GAGCGTCCGGCAGATCGGCGCGCTCGTCGGCCTGTCGTCCTCTTCGTCCGTCGCCTACCAGCTTGGCCGGCTGGAGGAGC
GGGGCCTGATCTCCCGCACCGGCCGCCACTGGCGCAACATCCACATGACCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(4-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

47.692

92.857

0.443