Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA53_RS10285 Genome accession   NZ_CP094724
Coordinates   2077441..2078814 (-) Length   457 a.a.
NCBI ID   WP_262618407.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2072441..2083814
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS10270 (MUA53_10255) cysE 2073600..2074229 (-) 630 WP_172457920.1 serine O-acetyltransferase -
  MUA53_RS10275 (MUA53_10260) gltX 2074613..2076067 (-) 1455 WP_262618405.1 glutamate--tRNA ligase -
  MUA53_RS10280 (MUA53_10265) - 2076348..2077418 (-) 1071 WP_002488403.1 PIN/TRAM domain-containing protein -
  MUA53_RS10285 (MUA53_10270) radA 2077441..2078814 (-) 1374 WP_262618407.1 DNA repair protein RadA Machinery gene
  MUA53_RS10290 (MUA53_10275) - 2078946..2081417 (-) 2472 WP_070672659.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA53_RS10295 (MUA53_10280) - 2081433..2082440 (-) 1008 WP_394371006.1 protein arginine kinase -
  MUA53_RS10300 (MUA53_10285) - 2082433..2082996 (-) 564 WP_115345300.1 UvrB/UvrC motif-containing protein -
  MUA53_RS10305 (MUA53_10290) - 2083028..2083489 (-) 462 WP_002449017.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50410.81 Da        Isoelectric Point: 7.4587

>NTDB_id=671343 MUA53_RS10285 WP_262618407.1 2077441..2078814(-) (radA) [Staphylococcus hominis strain IVB6247]
MAKKKVIFECMACGYQSPKWMGKCPNCGAWNQMEEIIEKTSNPKHGVKTKETQAKIQKLNSIKHETTPRVQTDSKEFNRV
LGGGIVSGSLVLIGGDPGIGKSTLLLQICASLSQKLNVLYITGEESLNQTKLRADRLEEDSSNLNVLAETDLEVIHQTVE
QERPDILVVDSIQTIYHPEISSAPGSVSQVRESTQSLMNIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLKGVQNPSEMFLEERSTNVPGSTIVATMEGTRPLLIEVQSLVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKENYLLQQQDAYIKVAGGVRLTEPAVDLSIIVATASSFKDKAVDGLDCYIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPKTNIGGWTFPEGVQVVGVTTVHDALKYAFSNRSS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=671343 MUA53_RS10285 WP_262618407.1 2077441..2078814(-) (radA) [Staphylococcus hominis strain IVB6247]
TTGGCCAAGAAAAAAGTAATTTTCGAATGTATGGCTTGTGGATATCAGTCTCCTAAATGGATGGGAAAATGTCCAAATTG
TGGTGCTTGGAATCAAATGGAGGAAATTATTGAAAAGACTTCCAATCCAAAACATGGTGTAAAGACAAAAGAGACACAAG
CAAAAATACAGAAATTAAATAGTATTAAGCATGAGACAACACCAAGAGTTCAAACGGACTCTAAAGAATTTAATCGTGTA
CTTGGTGGCGGAATTGTTAGTGGATCGCTCGTACTGATTGGCGGCGACCCAGGTATTGGGAAATCTACATTATTATTACA
GATTTGTGCATCGTTATCACAGAAACTTAATGTACTTTATATCACGGGTGAAGAATCACTAAATCAAACGAAATTGCGTG
CAGATCGTCTAGAGGAAGACTCTAGTAATTTAAATGTACTAGCTGAAACAGATTTAGAAGTTATTCATCAAACCGTGGAA
CAAGAGCGCCCAGATATACTTGTTGTCGATTCAATTCAAACGATTTATCATCCTGAGATTAGTTCAGCACCTGGCTCAGT
ATCACAAGTTCGAGAAAGTACACAAAGTTTAATGAATATTGCAAAACAAATGAATATCGCAACTTTTATAGTAGGTCATG
TAACAAAAGAAGGACAAATTGCTGGTCCAAGACTATTGGAACATATGGTAGATACAGTTTTATACTTCGAAGGTGATGAA
CACCATGCTTATCGAATTCTAAGAGCAGTTAAAAATCGTTTTGGTTCAACGAATGAAATGGGTATTTTTGAAATGAAACA
AAGTGGTTTGAAAGGTGTACAAAATCCTTCAGAAATGTTTTTAGAAGAACGCTCTACAAATGTTCCAGGATCAACAATTG
TGGCTACTATGGAAGGCACACGACCACTATTGATTGAGGTGCAATCTCTAGTAACACCTACTACATTTAATAATCCAAGA
CGAATGGCCACAGGCATCGACCACAATCGACTTAGTTTGCTTATGGCTGTTTTAGAGAAAAAAGAAAATTATCTTTTACA
ACAACAAGATGCTTACATTAAAGTAGCGGGTGGAGTGAGACTGACTGAACCGGCTGTAGATTTAAGTATTATTGTAGCGA
CTGCTTCAAGTTTTAAAGATAAAGCCGTAGATGGTTTGGATTGTTATATTGGTGAAGTGGGATTAACTGGTGAAGTAAGA
CGAGTATCGCGTATTGAGCAACGTGTACAAGAAGCGGCAAAACTAGGATTTAAGAGAGTGATTATTCCCAAAACGAATAT
AGGTGGATGGACATTCCCAGAAGGTGTTCAGGTCGTTGGCGTGACAACGGTACATGATGCCTTAAAATATGCGTTTAGTA
ATCGCTCATCATAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(355-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.351

99.781

0.652
  radA Streptococcus pneumoniae Rx1

59.382

99.125

0.589
  radA Streptococcus pneumoniae D39

59.382

99.125

0.589
  radA Streptococcus pneumoniae R6

59.382

99.125

0.589
  radA Streptococcus pneumoniae TIGR4

59.382

99.125

0.589
  radA Streptococcus mitis NCTC 12261

59.382

99.125

0.589
  radA Streptococcus mitis SK321

59.382

99.125

0.589