Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   MUA53_RS05980 Genome accession   NZ_CP094724
Coordinates   1193057..1194031 (+) Length   324 a.a.
NCBI ID   WP_155975638.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1194889..1196061 1193057..1194031 flank 858


Gene organization within MGE regions


Location: 1193057..1196061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS05980 (MUA53_05965) comGA 1193057..1194031 (+) 975 WP_155975638.1 competence type IV pilus ATPase ComGA Machinery gene
  MUA53_RS05985 (MUA53_05970) - 1194009..1194803 (+) 795 WP_262619490.1 type II secretion system F family protein -
  MUA53_RS05990 (MUA53_05975) - 1194889..1196061 (+) 1173 WP_000195429.1 IS256-like element IS256 family transposase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 36969.95 Da        Isoelectric Point: 8.2269

>NTDB_id=671332 MUA53_RS05980 WP_155975638.1 1193057..1194031(+) (comGA) [Staphylococcus hominis strain IVB6247]
MKLLFQEIINKAISKNASDVHFIPSEDKVHIKFRVNDRLETYEIFSNDIYEKLLIYMKFKANLDISTHQVAQSGRYTYHA
KSIFYLRISTLPLSLGIESCVIRLIPQYFTSKREYKDFNDFKPLMNKKQGLILLTGPTGSGKSTLMYQLVLYAFQELNLN
VITIENPVEQLLKGITQVSVNHKAGIDYVNSFKAILRCDPDVILIGEIRDAEVAKCVIQASLSGHLVLTTMHSSNCKGAI
LRLLEMGISVQEISQAINVISNQRLVTTTLNQRKLVCESITNNQIQYFFEHNHTLPETFNNLKEKLLSLSKEGLICEDVV
EKYI

Nucleotide


Download         Length: 975 bp        

>NTDB_id=671332 MUA53_RS05980 WP_155975638.1 1193057..1194031(+) (comGA) [Staphylococcus hominis strain IVB6247]
TTGAAATTATTATTTCAAGAAATAATTAATAAAGCAATTTCAAAAAATGCAAGTGACGTACACTTTATTCCTTCAGAGGA
TAAAGTACATATTAAATTCAGAGTGAATGATAGGTTAGAGACGTATGAAATATTTAGTAATGACATTTATGAAAAATTAT
TAATTTATATGAAATTTAAAGCAAATTTAGATATATCAACACATCAAGTAGCTCAAAGTGGTAGATATACTTATCATGCT
AAATCAATATTTTATTTAAGAATTTCTACTTTACCTTTATCATTAGGAATAGAAAGTTGTGTTATCAGACTTATCCCTCA
ATATTTCACTTCTAAAAGAGAGTATAAAGACTTTAATGACTTTAAACCTCTAATGAATAAAAAGCAAGGTCTCATTTTAC
TTACTGGTCCAACAGGTTCAGGTAAAAGTACTTTGATGTATCAATTAGTACTCTATGCTTTTCAAGAATTAAATTTAAAT
GTTATTACAATAGAAAATCCTGTTGAACAATTATTAAAAGGCATAACACAAGTATCAGTAAATCATAAAGCTGGTATAGA
TTATGTTAATTCATTTAAAGCAATATTAAGATGTGATCCAGATGTTATTTTAATTGGTGAAATTAGAGATGCTGAAGTGG
CAAAATGTGTTATTCAAGCAAGTTTAAGTGGTCATTTAGTGCTAACCACTATGCATTCAAGCAATTGTAAGGGCGCAATA
CTCAGATTGTTAGAGATGGGGATTAGTGTTCAAGAAATTTCACAAGCAATAAATGTCATTTCAAATCAAAGATTAGTTAC
AACTACTTTAAATCAAAGAAAGCTTGTTTGTGAGTCTATTACAAATAATCAAATTCAATATTTTTTTGAACATAACCATA
CGCTTCCTGAGACATTTAATAATTTAAAAGAAAAATTGTTATCGCTATCGAAAGAAGGTCTTATATGTGAAGATGTGGTT
GAAAAATATATTTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Staphylococcus aureus MW2

69.444

100

0.694
  comGA Staphylococcus aureus N315

69.444

100

0.694