Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   MUA53_RS04100 Genome accession   NZ_CP094724
Coordinates   835880..836596 (-) Length   238 a.a.
NCBI ID   WP_002455088.1    Uniprot ID   -
Organism   Staphylococcus hominis strain IVB6247     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 830880..841596
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA53_RS04080 (MUA53_04070) - 831548..831772 (+) 225 WP_002448268.1 sulfurtransferase TusA family protein -
  MUA53_RS04085 (MUA53_04075) - 831883..833127 (+) 1245 WP_262619273.1 ammonium transporter -
  MUA53_RS11040 - 833233..833300 (+) 68 Protein_798 LacI family DNA-binding transcriptional regulator -
  MUA53_RS04090 (MUA53_04080) - 833382..834869 (+) 1488 WP_115344724.1 sucrose-6-phosphate hydrolase -
  MUA53_RS04095 (MUA53_04085) - 834870..835829 (+) 960 WP_262619276.1 carbohydrate kinase -
  MUA53_RS04100 (MUA53_04090) agrA 835880..836596 (-) 717 WP_002455088.1 quorum-sensing response regulator AgrA Regulator
  MUA53_RS04105 (MUA53_04095) agrC 836609..837898 (-) 1290 WP_262619278.1 quorum-sensing sensor histidine kinase AgrC -
  MUA53_RS04110 (MUA53_04100) agrD 837923..838063 (-) 141 WP_017175278.1 cyclic lactone autoinducer peptide AgrD -
  MUA53_RS04115 (MUA53_04105) - 838066..838632 (-) 567 WP_262619281.1 accessory gene regulator AgrB -
  MUA53_RS04120 (MUA53_04110) - 839334..840119 (-) 786 WP_155975513.1 carbon-nitrogen family hydrolase -
  MUA53_RS04125 (MUA53_04115) - 840250..840873 (-) 624 WP_155975514.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27858.75 Da        Isoelectric Point: 5.2104

>NTDB_id=671321 MUA53_RS04100 WP_002455088.1 835880..836596(-) (agrA) [Staphylococcus hominis strain IVB6247]
MKIFICEDDVKQRENMVSIINNYIMIEEKPMEIALATDDPYEIIEQSKEMNDVGCYFLDIQLEADINGIKLGSEIRKYDP
IGNIIFVTSHSELTYLTFVYKVSAMDFIFKDDPNQLKTRIIDCIETAHTRLKLLSKESNVETIELKRGSNSIYVQYDDVM
FFESSTKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSFVVNRHNIDSVDSKERIVTFRNGEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=671321 MUA53_RS04100 WP_002455088.1 835880..836596(-) (agrA) [Staphylococcus hominis strain IVB6247]
ATGAAAATATTCATTTGTGAAGACGATGTGAAACAACGTGAAAATATGGTTTCAATTATTAACAACTATATAATGATTGA
AGAAAAACCGATGGAAATAGCGTTAGCGACAGATGATCCTTATGAAATTATTGAACAGTCAAAAGAAATGAATGATGTTG
GATGTTATTTTTTAGATATACAATTGGAAGCTGATATTAACGGTATTAAACTTGGAAGTGAAATTCGAAAGTATGATCCT
ATTGGAAATATCATCTTTGTTACAAGTCATAGTGAACTCACTTACCTAACATTTGTCTATAAGGTATCTGCAATGGATTT
TATTTTTAAAGATGATCCTAATCAACTTAAAACACGAATAATAGATTGTATTGAAACTGCTCATACACGTTTAAAATTAC
TTTCAAAAGAAAGCAATGTTGAAACAATTGAATTAAAGCGTGGTAGCAATTCAATATATGTACAATATGATGATGTCATG
TTCTTTGAATCGTCTACAAAATCCCATCGTTTAATTGCGCATCTTGATAACCGTCAGATTGAATTCTACGGAAATCTTAA
AGAATTAGCACAACTCGATGATCGCTTTTTCAGATGTCACAATAGTTTTGTTGTAAATCGTCATAATATCGATTCAGTTG
ATTCTAAAGAACGAATTGTAACTTTCAGAAATGGTGAGCATTGCTATGCCTCTGTACGTAATGTTAAAAAGATATAA

Domains

Predicted by InterproScan.

LytTr DNA-binding domain (LytTR)

(151-237)

Response regulator receiver domain (Response_reg)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

87.395

100

0.874