Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MUA51_RS01215 Genome accession   NZ_CP094723
Coordinates   258959..260323 (+) Length   454 a.a.
NCBI ID   WP_262560077.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 253959..265323
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA51_RS01195 (MUA51_01195) - 254330..254791 (+) 462 WP_262560074.1 CtsR family transcriptional regulator -
  MUA51_RS01200 (MUA51_01200) - 254929..255348 (+) 420 Protein_220 UvrB/UvrC motif-containing protein -
  MUA51_RS01205 (MUA51_01205) - 255338..256342 (+) 1005 WP_262560075.1 protein arginine kinase -
  MUA51_RS01210 (MUA51_01210) - 256358..258805 (+) 2448 WP_262560076.1 ATP-dependent Clp protease ATP-binding subunit -
  MUA51_RS01215 (MUA51_01215) radA 258959..260323 (+) 1365 WP_262560077.1 DNA repair protein RadA Machinery gene
  MUA51_RS01220 (MUA51_01220) ispD 260364..261062 (+) 699 WP_262560078.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  MUA51_RS01225 (MUA51_01225) ispF 261055..261537 (+) 483 WP_262560079.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  MUA51_RS01230 (MUA51_01230) gltX 261868..263322 (+) 1455 WP_262560080.1 glutamate--tRNA ligase -
  MUA51_RS01235 (MUA51_01235) cysE 263620..264261 (+) 642 WP_262560081.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49988.59 Da        Isoelectric Point: 7.5077

>NTDB_id=671286 MUA51_RS01215 WP_262560077.1 258959..260323(+) (radA) [Staphylococcus sp. IVB6214]
MAKKKVTFECTACGYQTPKWMGKCPNCGAWNSMEETIEQKTSHSKHSVRTESTAKVQKLNDVKQEQAPRILTKSRELNRV
LGGGIVQGSLVLIGGDPGIGKSTLLLQMCAALSKERKILYITGEESLNQTKLRADRLEEDASALNVFAETNLEIIHEAVK
KLEPELIVVDSIQTIFHPDITSAPGSVSQVRESTQSLMHIAKQMNIATFIVGHVTKEGQIAGPRLLEHMVDTVLYFEGDE
HHAYRILRAVKNRFGSTNEMGIFEMKQSGLHSVVNPSEMFLEERSSNVPGSTIVATMEGTRPLLIEVQALVTPTTFNNPR
RMATGIDHNRLSLLMAVLEKKEGYLLQQQDAYIKVAGGVKLTEPAVDLGIIIATATSFKDRAVDGLDCFIGEVGLTGEVR
RVSRIEQRVQEAAKLGFKRVIIPQTNIGGWTFPEGIEVIGVTSVHEALKYALKS

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=671286 MUA51_RS01215 WP_262560077.1 258959..260323(+) (radA) [Staphylococcus sp. IVB6214]
ATGGCAAAAAAGAAAGTGACTTTTGAGTGTACGGCATGTGGCTATCAAACGCCGAAATGGATGGGGAAATGCCCTAACTG
CGGTGCGTGGAATAGTATGGAAGAGACGATTGAACAAAAAACGTCACACTCAAAACATAGTGTTCGTACAGAATCGACAG
CTAAAGTGCAAAAACTGAATGATGTCAAACAAGAGCAAGCGCCGCGCATTTTAACAAAAAGCCGAGAACTGAATCGTGTG
CTCGGTGGCGGGATTGTACAAGGTTCACTCGTACTGATCGGGGGAGATCCAGGTATTGGTAAGTCGACGTTATTGCTACA
AATGTGTGCAGCATTATCTAAGGAGCGCAAGATTTTATATATTACGGGTGAAGAATCTTTGAATCAAACGAAGCTGCGTG
CTGATCGTCTAGAAGAAGATGCCAGTGCTTTGAATGTCTTTGCAGAGACAAACTTAGAAATCATTCATGAAGCAGTGAAG
AAGTTAGAACCAGAGTTAATTGTCGTTGACTCGATTCAGACAATTTTTCATCCTGACATTACATCGGCGCCAGGATCTGT
GTCACAAGTGCGAGAAAGTACACAAAGTTTGATGCATATCGCCAAGCAGATGAATATTGCGACGTTTATTGTTGGACATG
TGACGAAAGAAGGTCAGATTGCAGGTCCGCGTTTATTAGAACATATGGTAGACACTGTACTGTATTTTGAAGGAGATGAG
CACCATGCGTATCGTATTTTACGTGCAGTGAAAAACCGTTTTGGCTCTACGAATGAGATGGGTATTTTTGAGATGAAACA
GTCTGGTTTACACAGTGTCGTCAACCCATCAGAGATGTTTTTAGAAGAGCGTTCATCCAACGTTCCAGGCTCAACGATTG
TTGCTACGATGGAAGGGACACGTCCATTACTCATCGAAGTACAAGCGCTTGTGACGCCGACGACTTTCAATAATCCACGT
CGAATGGCGACAGGTATCGATCACAATCGTTTAAGCTTGTTAATGGCAGTACTCGAGAAGAAAGAAGGGTACTTGTTACA
ACAACAAGATGCGTATATTAAAGTTGCGGGCGGTGTGAAGTTGACAGAGCCTGCCGTAGACTTAGGTATTATCATTGCCA
CAGCGACAAGCTTCAAAGATCGTGCGGTTGATGGATTGGATTGCTTTATAGGTGAAGTAGGTCTTACAGGAGAAGTACGA
CGTGTGTCACGTATTGAACAGCGTGTACAAGAAGCGGCAAAGTTAGGCTTCAAGCGTGTCATTATTCCACAGACCAATAT
TGGTGGATGGACATTCCCAGAAGGCATAGAAGTGATCGGTGTGACATCGGTTCATGAAGCATTGAAGTATGCTTTAAAAT
CATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-218)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-426)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

65.789

100

0.661
  radA Streptococcus pneumoniae Rx1

58.797

98.899

0.581
  radA Streptococcus pneumoniae D39

58.797

98.899

0.581
  radA Streptococcus pneumoniae R6

58.797

98.899

0.581
  radA Streptococcus pneumoniae TIGR4

58.797

98.899

0.581
  radA Streptococcus mitis NCTC 12261

58.797

98.899

0.581
  radA Streptococcus mitis SK321

58.797

98.899

0.581