Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccrA   Type   Machinery gene
Locus tag   MUA51_RS00300 Genome accession   NZ_CP094723
Coordinates   66852..68201 (-) Length   449 a.a.
NCBI ID   WP_262559928.1    Uniprot ID   -
Organism   Staphylococcus sp. IVB6214     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context


Location: 61852..73201
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA51_RS00275 (MUA51_00275) - 63225..63449 (-) 225 WP_262559923.1 hypothetical protein -
  MUA51_RS00280 (MUA51_00280) - 63464..63964 (-) 501 WP_262559925.1 DUF1643 domain-containing protein -
  MUA51_RS00285 (MUA51_00285) - 63978..64289 (-) 312 WP_262559926.1 DUF960 domain-containing protein -
  MUA51_RS00290 (MUA51_00290) - 64385..64723 (-) 339 WP_262559927.1 SAUGI family uracil-DNA glycosylase inhibitor -
  MUA51_RS00295 (MUA51_00295) - 65196..66832 (-) 1637 Protein_56 recombinase family protein -
  MUA51_RS00300 (MUA51_00300) ccrA 66852..68201 (-) 1350 WP_262559928.1 recombinase family protein Machinery gene
  MUA51_RS00305 (MUA51_00305) - 68701..70485 (-) 1785 WP_262559929.1 DUF927 domain-containing protein -
  MUA51_RS00310 (MUA51_00310) - 70485..70778 (-) 294 WP_262559930.1 single-stranded DNA-binding protein -
  MUA51_RS00315 (MUA51_00315) - 70958..71950 (-) 993 WP_262559931.1 hypothetical protein -
  MUA51_RS00320 (MUA51_00320) - 72144..72710 (+) 567 WP_262559932.1 hypothetical protein -

Sequence


Protein


Download         Length: 449 a.a.        Molecular weight: 52286.13 Da        Isoelectric Point: 10.0300

>NTDB_id=671283 MUA51_RS00300 WP_262559928.1 66852..68201(-) (ccrA) [Staphylococcus sp. IVB6214]
MKQAIGYLRQSTLKKQSLSAQKQTIKALAEKHNIQHITFYSDKQSGRTDKRNGYQQVITLIQQGHCDVLCCYRLNRLHRN
LKNALKLIRLCQKHQVHILSVCDGYFNLDSSFDRLKLNIFISLAELESDNISEQVKNGLREKARQGKLITTHAPFGYHYH
DGTFTINKDEAPTVKAIFDDYVEGYGYKKISQRLEKSNHLINRKPFQVRCIILNPNYCGRVLNQYGQYDNMFPPIVSVSL
YEYAQKVRNQRQVKRRSSDNQLKQKIKCPCCGSTLTNLTIRKKKHALRYYVCPRNMNASRFVCDFKGINAQMLETRVLTT
CKDFFQNQQLYLKINQTIQQQLKNQRTLETKHILTQEQLIEKLAQGTITADTFREKSLLLQQQSKTNSSISSTQIQRAFQ
NVIQQCFTLNMLYPYIDEIHITENKTLTGIYFKNEPLNIVNQDMQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=671283 MUA51_RS00300 WP_262559928.1 66852..68201(-) (ccrA) [Staphylococcus sp. IVB6214]
ATGAAACAAGCAATAGGTTATCTACGTCAAAGTACACTCAAAAAACAATCACTCTCAGCCCAAAAACAAACCATCAAGGC
ATTAGCCGAAAAGCATAATATTCAACACATTACCTTTTATAGCGATAAGCAATCAGGTCGAACTGATAAACGCAATGGTT
ACCAACAAGTCATTACGCTAATTCAACAAGGTCACTGTGACGTATTATGTTGCTACAGACTGAATCGATTACACCGAAAT
TTGAAAAATGCTTTGAAACTTATCAGATTATGTCAAAAGCATCAGGTTCATATCTTAAGTGTCTGTGATGGCTATTTCAA
CTTAGACTCATCTTTTGATCGTTTAAAACTTAACATTTTCATCAGCCTTGCAGAGTTAGAATCTGATAATATCAGTGAAC
AGGTCAAAAATGGACTACGCGAAAAAGCTCGCCAAGGTAAACTCATTACAACTCACGCCCCTTTTGGCTATCACTATCAC
GATGGGACATTTACTATAAATAAGGATGAAGCACCTACTGTAAAAGCCATATTCGACGACTACGTGGAAGGTTACGGATA
CAAGAAAATTTCTCAACGCTTAGAAAAATCCAATCACCTCATCAACCGAAAACCTTTTCAAGTGCGTTGTATTATCCTAA
ATCCTAATTACTGTGGCCGAGTGCTAAATCAATATGGACAATACGATAATATGTTCCCCCCTATTGTTTCAGTCAGCTTG
TATGAATACGCTCAAAAAGTTAGAAACCAAAGACAAGTTAAACGTAGATCTTCAGACAACCAACTCAAACAAAAAATCAA
ATGCCCTTGTTGTGGTTCAACGCTCACCAATCTGACCATTAGGAAAAAGAAGCACGCATTGCGTTATTATGTTTGTCCAA
GAAATATGAATGCTTCACGTTTTGTCTGTGATTTCAAGGGCATCAATGCACAAATGCTAGAAACAAGGGTCTTAACAACT
TGTAAGGACTTTTTTCAAAATCAACAGCTCTATTTAAAAATTAATCAAACAATCCAACAACAACTAAAAAACCAAAGAAC
TTTGGAAACGAAACATATACTCACCCAAGAACAACTAATAGAAAAGCTCGCTCAAGGGACGATTACTGCAGATACATTCA
GAGAAAAATCTCTACTGTTACAACAACAATCAAAAACCAATTCATCCATTAGCTCGACTCAAATTCAAAGGGCTTTTCAA
AATGTCATTCAACAATGTTTCACGTTAAATATGTTATACCCCTATATTGATGAAATTCATATTACAGAAAATAAAACGCT
TACAGGAATCTATTTCAAAAATGAACCCTTAAACATCGTCAATCAAGATATGCAATCATCGATTGCCTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

76.392

100

0.764

  ccrA Staphylococcus aureus N315

71.492

100

0.715