Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG808_RS29380 Genome accession   NZ_CP109123
Coordinates   6511518..6513251 (-) Length   577 a.a.
NCBI ID   WP_326630528.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01761     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 6506518..6518251
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG808_RS29370 (OG808_29455) - 6508449..6509576 (+) 1128 WP_326630524.1 RNA polymerase sigma factor -
  OG808_RS29375 (OG808_29460) rcrQ 6509593..6511518 (-) 1926 WP_326630526.1 ABC transporter ATP-binding protein Regulator
  OG808_RS29380 (OG808_29465) rcrP 6511518..6513251 (-) 1734 WP_326630528.1 ABC transporter ATP-binding protein Regulator
  OG808_RS29385 (OG808_29470) - 6513422..6514867 (-) 1446 WP_326630529.1 FGGY family carbohydrate kinase -
  OG808_RS29390 (OG808_29475) - 6514928..6515233 (-) 306 WP_326608456.1 YtxH domain-containing protein -
  OG808_RS29410 (OG808_29495) - 6516609..6516800 (+) 192 WP_267005305.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62852.88 Da        Isoelectric Point: 5.3818

>NTDB_id=671278 OG808_RS29380 WP_326630528.1 6511518..6513251(-) (rcrP) [Streptomyces sp. NBC_01761]
MLIKLLRACLGPYKKPIMLLVALQLLQTCATLYLPSLNADIIDNGVVEGDTGYILTYGGIMIAVSIAQVICNTGAVFYGA
RTAAALGRDVRASVFDRVQSFSAREVGRFGAPSLITRTTNDVQQVQMLVLMTFTMMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGIAVSLIVRRMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETDSSVVP
PVEPVRELRAHGHLEVRAADFRYPGAEEPVLRSVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTDGHVLVDGTDVR
TLEPTLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKEFVEELEHGLHAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRRALSQETAESTVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=671278 OG808_RS29380 WP_326630528.1 6511518..6513251(-) (rcrP) [Streptomyces sp. NBC_01761]
GTGCTCATAAAACTCCTGCGGGCCTGTCTCGGCCCGTACAAGAAACCGATCATGCTGTTGGTGGCTCTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTCCCCTCTCTCAACGCCGACATCATTGACAACGGTGTCGTCGAGGGGGACACCGGCTACA
TCCTGACGTACGGCGGCATCATGATCGCCGTCTCCATCGCCCAGGTCATCTGCAACACGGGGGCCGTCTTCTACGGTGCG
CGAACTGCGGCCGCACTGGGCCGGGATGTCCGGGCGTCGGTCTTCGACCGGGTTCAGTCGTTCTCGGCACGTGAGGTCGG
GCGCTTCGGGGCACCCTCGCTGATCACCCGTACGACCAATGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CCATGATGGTCTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTTCCGCTGTCGGCGGTG
CTGCTCGCGGTGGTGCCGGTGCTCGGCATCGCGGTGAGTCTCATCGTGCGGCGGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCATTCGTCCGCGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCCAACACCGAGTTGACCGATGTGGCGCTCTCCACCGGGCGTCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTGGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTACCTGATGCAGATCGTCATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGTGCCGAGCGCATCCAGGAAGTGCTGGAGACCGATTCGAGCGTGGTGCCG
CCGGTCGAGCCTGTGCGGGAGCTGCGCGCCCACGGCCATCTGGAGGTGCGGGCTGCGGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGTTGCGGTCGGTGGATCTGGTGGCGCGGCCCGGTGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGTCTCGTACCGCGGCTGTTCGATGTGACGGACGGTCACGTACTGGTCGACGGCACGGACGTACGG
ACGCTGGAGCCGACGCTGCTGGCGAAGACGGTGAGTCTGGTTCCGCAGAAGCCCTATCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGAAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTCGCGCAGGCCAAGGAGTTCG
TCGAGGAGCTGGAGCACGGGCTGCACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGACTC
GCGATCGCGAGGACGCTGGTGCAGCGACCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTATGCGACGGA
TGCCGCGCTGCGCCGGGCACTGTCGCAGGAGACTGCCGAGTCGACCGTGGTGATCGTGGCTCAGCGGGTGTCCACCATCC
GTGACGCGGACCGGATCCTGGTGCTCGACGAGGGCCGGGTCGTCGGCTCCGGTACCCATCACGAGCTGATGGACGGCAAT
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.271

100

0.412